BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC14ZA07RM1.SCF screened BAC_end
(921 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1152 1485 0.0
>3x_Contig1152
Length = 5366
Score = 1485 bits (749), Expect = 0.0
Identities = 758/761 (99%)
Strand = Plus / Plus
Query: 48 gcttataaacgaacaatcgcaagattaagtggagagtatcgaattatcaaacgctttgac 107
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 4606 gcttataaacgaacaatcgcaagataaagtggagagtatcgaattatcaaacgctttgac 4665
Query: 108 aagattgcaacaagaagacaaggtagtaatcttaggagaaggtctaagaagatcaattcg 167
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4666 aagattgcaacaagaagacaaggtagtaatcttaggagaaggtctaagaagatcaattcg 4725
Query: 168 tttgaatggccgtgtatgaatagatattatcaagtctagtttttctgagaaagccttttc 227
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
Sbjct: 4726 tttgaatggccgtgtatgaatagatattatcaagtctagtttttctgagaaagcctctac 4785
Query: 228 atagtttgcaaagggctaaatgagaataacgaccttccgcatgttctgcttatatacata 287
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4786 atagtttgcaaagggctaaatgagaataacgaccttccgcatgttctgcttatatacata 4845
Query: 288 cgttctgtgtatatatcatcgtgaaagtgtttgacattataatagcatatttagttagag 347
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4846 cgttctgtgtatatatcatcgtgaaagtgtttgacattataatagcatatttagttagag 4905
Query: 348 tagcctaaagaaaggtcccccgagatccatctgttgatcatttccatagtagctagtggt 407
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4906 tagcctaaagaaaggtcccccgagatccatctgttgatcatttccatagtagctagtggt 4965
Query: 408 tgataatatggaaccgtatgacctgcttcgaatactctgaggaaagtaaagggtccgtgg 467
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4966 tgataatatggaaccgtatgacctgcttcgaatactctgaggaaagtaaagggtccgtgg 5025
Query: 468 tttttgacctcaccaaactggacggatccgttcaaactataccatgggtttaagggtaac 527
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5026 tttttgacctcaccaaactggacggatccgttcaaactataccatgggtttaagggtaac 5085
Query: 528 gtttcatagcttatatggtccttccatgtgagagcatcggtccacgccatattacccaac 587
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5086 gtttcatagcttatatggtccttccatgtgagagcatcggtccacgccatattacccaac 5145
Query: 588 caattacatatgtagtctgtatcgccggcatatatcaagacaggaatgttcaaatcaagc 647
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5146 caattacatatgtagtctgtatcgccggcatatatcaagacaggaatgttcaaatcaagc 5205
Query: 648 agttcggtcacatattgctggaatggcctgctattatcacccgtcaggaagaagtcgctc 707
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5206 agttcggtcacatattgctggaatggcctgctattatcacccgtcaggaagaagtcgctc 5265
Query: 708 ccaactgaagtattacatccgttatacgagctcactttcgtacctagagcgtcttgcaca 767
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5266 ccaactgaagtattacatccgttatacgagctcactttcgtacctagagcgtcttgcaca 5325
Query: 768 aattcttggttcaagtaagagcggatatatcctaaggtctt 808
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 5326 aattcttggttcaagtaagagcggatatatcctaaggtctt 5366
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5383
Number of Sequences: 1807
Number of extensions: 5383
Number of successful extensions: 28
Number of sequences better than 1.0e-20: 1
length of query: 921
length of database: 10,358,551
effective HSP length: 16
effective length of query: 905
effective length of database: 10,329,639
effective search space: 9348323295
effective search space used: 9348323295
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)