BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC14ZA08FM1.SCF screened BAC_end
(920 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1357 1562 0.0
>3x_Contig1357
Length = 8096
Score = 1562 bits (788), Expect = 0.0
Identities = 826/832 (99%), Gaps = 5/832 (0%)
Strand = Plus / Plus
Query: 89 actaatgtaaagtttcgtttgtacaattcctgatctacaggaaccatctcgccgttcggt 148
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4767 actaatgtaaagtttcgtttgtacaattcctgatctacaggaaccatctcgccgttcggt 4826
Query: 149 ggcactagaaactcactttcagtgtatagtatacccttctgaacaagttgtaccaaacat 208
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4827 ggcactagaaactcactttcagtgtatagtatacccttctgaacaagttgtaccaaacat 4886
Query: 209 cccagaggtatatgctctttgaaccgttcttcaaactcaagaactcgagtttcttcttgc 268
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4887 cccagaggtatatgctctttgaaccgttcttcaaactcaagaactcgagtttcttcttgc 4946
Query: 269 aatgcaagtgctgaaacttcatgtccggcttcttgtaaatacctccaaataaggtaattg 328
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4947 aatgcaagtgctgaaacttcatgtccggcttcttgtaaatacctccaaataaggtaattg 5006
Query: 329 agctcttcactagctatcgacattgcaataaaacaaatctagaatatcgtagcaagtctc 388
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5007 agctcttcactagctatcgacattgcaataaaacaaatctagaatatcgtagcaagtctc 5066
Query: 389 cagctacctttctcctactgatacaaccacaaaccgccggactgatagcgttgcgttttc 448
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5067 cagctacctttctcctactgatacaaccacaaaccgccggactgatagcgttgcgttttc 5126
Query: 449 ctgttttgttgtctttcaattgtttgtttgtttgattacttcaatttcgatatttagtta 508
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5127 ctgttttgttgtctttcaattgtttgtttgtttgattacttcaatttcgatatttagtta 5186
Query: 509 ttgaaaaatcgtttaatatcgcttcaatgaaagcatcaacaagtctgttaacatgacaaa 568
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5187 ttgaaaaatcgtttaatatcgcttcaatgaaagcatcaacaagtctgttaacatgacaaa 5246
Query: 569 caagggaataagctcgtaatatagggcgcattgacagctactattgtgtgaaccaggtta 628
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5247 caagggaataagctcgtaatatagggcgcattgacagctactattgtgtgaaccaggtta 5306
Query: 629 aagaattgttatttaattgtttgacttctttagcagacgaattattgctcaaatactgca 688
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5307 aagaattgttatttaattgtttgacttctttagcagacgaattattgctcaaatactgca 5366
Query: 689 gatatcaattcgccagcaagccgatttctgtttattttagtacaagtatcaccgtgttaa 748
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5367 gatatcaattcgccagcaagccgatttctgtttattttagtacaagtatcaccgtgttaa 5426
Query: 749 ggggcagataacaacgggatcaattaaatcatggtcgacttctctttgaag-agcatggt 807
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 5427 ggggcagataacaacgggatcaattaaatcatggtcgacttctctttgaagaagcatggt 5486
Query: 808 gtttctagttggggccgtggttccttatcaaggaagg-aagcagtgccggtgattcttca 866
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 5487 gtttctagttggggccgtggttccttatcaaggaaggaaagcagtgccggtgattcttca 5546
Query: 867 tct-cgttcaaatcgagta-gtatcaagatatgaa-gtttttgatccagaat 915
||| ||||||||||||||| ||||||||||||||| |||| |||||||||||
Sbjct: 5547 tctacgttcaaatcgagtaggtatcaagatatgaaggtttctgatccagaat 5598
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6651
Number of Sequences: 1807
Number of extensions: 6651
Number of successful extensions: 66
Number of sequences better than 1.0e-20: 1
length of query: 920
length of database: 10,358,551
effective HSP length: 16
effective length of query: 904
effective length of database: 10,329,639
effective search space: 9337993656
effective search space used: 9337993656
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)