BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC14ZA08RM1.SCF screened BAC_end
(924 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1582 1703 0.0
>3x_Contig1582
Length = 14087
Score = 1703 bits (859), Expect = 0.0
Identities = 868/871 (99%)
Strand = Plus / Minus
Query: 49 aaccactggtagaagttttcgatgaattaggatccctaactcaaatgtcccttctaatgg 108
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12998 aaccactggtagaagttttcgatgaattaggatccctaactcaaatgtcccttctaatgg 12939
Query: 109 gtgtagtgaaatgccataatgcagtctcaagtgctttcttacagaagatcttggaacttt 168
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12938 gtgtagtgaaatgccataatgcagtctcaagtgctttcttacagaagatcttggaacttt 12879
Query: 169 gtacgacagacgtccacgatttggacgttagagacatggccatgatgtactggcggtgtc 228
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12878 gtacgacagacgtccacgatttggacgttagagacatggccatgatgtactggcggtgtc 12819
Query: 229 tatcgatcgacaacggtgatcaaatcatcaaccaattatttgacaagcatgaaattccta 288
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12818 tatcgatcgacaacggtgatcaaatcatcaaccaattatttgacaagcatgaaattccta 12759
Query: 289 aattgcattctaccttggaccacttctccaaggaaacattacaaagtctacttcaagagc 348
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12758 aattgcattctaccttggaccacttctccaaggaaacattacaaagtctacttcaagagc 12699
Query: 349 tctccactctatcctctgtgtatttcaaaccaatctcgcagatgcaacgccgtcccaacg 408
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12698 tctccactctatcctctgtgtatttcaaaccaatctcgcagatgcaacgccgtcccaacg 12639
Query: 409 aagttcacatcattaaggataaggatattgatgaattaaagggaatggccacgaacgaga 468
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12638 aagttcacatcattaaggataaggatattgatgaattaaagggaatggccacgaacgaga 12579
Query: 469 tcctgaaaaacatgaacgatgatgtactacttgacatgggtgatagctctgccacgagaa 528
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12578 tcctgaaaaacatgaacgatgatgtactacttgacatgggtgatagctctgccacgagaa 12519
Query: 529 gtacaggcgtcctggacgaactaaatgatcttttcgatatcactggtgatatggggaaag 588
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12518 gtacaggcgtcctggacgaactaaatgatcttttcgatatcactggtgatatggggaaag 12459
Query: 589 taaacatttcacagaaaaccaataataacaacaacaacacctcgaattcccatgcaaccg 648
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12458 taaacatttcacagaaaaccaataataacaacaacaacacctcgaattcccatgcaaccg 12399
Query: 649 atcttctagacttaatgtaaactagtttactcttttgaacacctgtacaaactataatta 708
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12398 atcttctagacttaatgtaaactagtttactcttttgaacacctgtacaaactataatta 12339
Query: 709 taatgggaaacaatgaagcagataaacttcaatcatggatgtgcctttctaaaatgttaa 768
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12338 taatgggaaacaatgaagcagataaacttcaatcatggatgtgcctttctaaaatgttaa 12279
Query: 769 tttattatggtgcagtatctactactatatacaagtaaccccagtggcatgtcatgtcat 828
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12278 tttattatggtgcagtatctactactatatacaagtaaccccagtggcatgtcatgtcat 12219
Query: 829 gtcatatcatgtcaactttattccttttgtttcttgagaagatcctcaagtcttttaatc 888
||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||
Sbjct: 12218 gtcatatcatgtcaactttattccttttgtttcttgagaagatcctcaagtctctcaatc 12159
Query: 889 tttcgttccactatcaagtcacgttgacgat 919
|| ||||||||||||||||||||||||||||
Sbjct: 12158 ttacgttccactatcaagtcacgttgacgat 12128
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7354
Number of Sequences: 1807
Number of extensions: 7354
Number of successful extensions: 53
Number of sequences better than 1.0e-20: 1
length of query: 924
length of database: 10,358,551
effective HSP length: 16
effective length of query: 908
effective length of database: 10,329,639
effective search space: 9379312212
effective search space used: 9379312212
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)