BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC14ZA10RM1.SCF screened BAC_end
(914 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1804 1592 0.0
>3x_Contig1804
Length = 51183
Score = 1592 bits (803), Expect = 0.0
Identities = 849/863 (98%), Gaps = 2/863 (0%)
Strand = Plus / Minus
Query: 45 gcttcaagtaatcaagatggttttctttatcaaccacattcttgtatggtgtctttttgc 104
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 26279 gcttcaagtaatcaagatggttttctttatcaaccacattcttgtatggtgtctttttgc 26220
Query: 105 tggattcttccgaggtatctacttcattcacatcttcagaatgagctttttccatcacga 164
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 26219 tggattcttccgaggtatctacttcattcacatcttcagaatgagctttttccatcacga 26160
Query: 165 cttcaagttcctttttctccaagctcaactttggtaagaaagttgagttaccaacctttt 224
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 26159 cttcaagttcctttttctccaagctcaactttggtaagaaagttgagttaccaaccagct 26100
Query: 225 ctgcctcttctatagactttccaacgtagatattgtcgaatgatatatcgcttgcacttg 284
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 26099 ctgcctcttctatagactttccaacgtagatattgtcgaatgatatatcgcttgcacttg 26040
Query: 285 accaaatatcaaaggaaattgcagtaatagcatcaatgttcgctggtgttttatcctcat 344
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 26039 accaaatatcaaaggaaattgcagtaatagcatcaatgttcgctggtgttttatcctcat 25980
Query: 345 aataattgggattcgctatgagaggcgccttccattcaccttgataattggggttaggga 404
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 25979 aataattgggattcgctatgagaggcgccttccattcaccttgataattggggttaggga 25920
Query: 405 tcatttcagccttccaagtacctctgtatttttcattttcaaccatctttggtctccact 464
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 25919 tcatttcagccttccaagtacctctgtatttttcattttcaaccatctttggtctccact 25860
Query: 465 ttccacaaccttgtttcgtatagcacgaaggattaacaataaggggagcaatccatcttc 524
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 25859 ttccacaaccttgtttcgtatagcacgaaggattaacaataaggggagcaatccatcttc 25800
Query: 525 catccaccttgtcattccaccaatctggtttagaacgcgattcatcctcgatgtattcag 584
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 25799 catccaccttgtcattccaccaatctggtttagaacgcgattcatcctcgatgtattcag 25740
Query: 585 agatgctgtcatcccattcctctggttttttgaacattggatctggaatccacttgggtt 644
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 25739 agatgctgtcatcccattcctctggttttttgaacattggatctggaatccacttgggtt 25680
Query: 645 cattttcatcccagtcttccggttttatggcagtgggatcagggatcatagacctgctgc 704
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 25679 cattttcatcccagtcttccggttttatggcagtgggatcagggatcatagacctgctgc 25620
Query: 705 cccaatccgctggctgactagcagaaggatcttcaatttcccttggagggattaggctgg 764
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 25619 cccaatccgctggctgactagcagaaggatcttcaatttcccttggaggatttaggctgg 25560
Query: 765 gtctgaatgttccctccgcaagcaagtttcctgccttgacaac-nctncatcgattct-a 822
||||||||||||||||||||||||||||||||||||||||||| || |||||||||| |
Sbjct: 25559 gtctgaatgttccctccgcaagcaagtttcctgccttgacaacttctccatcgattctaa 25500
Query: 823 tttncaatgactgatctgcagagtctaatatcaaagtgtataaacgagtaatcggntggt 882
||| ||||||||||||||||||||||||||||| |||||||||||||||||||| ||||
Sbjct: 25499 tttcaaatgactgatctgcagagtctaatatcaaggtgtataaacgagtaatcggttggt 25440
Query: 883 ctaatcctgaaagtgttgcttct 905
||||||||||||||| |||||||
Sbjct: 25439 ctaatcctgaaagtggtgcttct 25417
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6418
Number of Sequences: 1807
Number of extensions: 6418
Number of successful extensions: 54
Number of sequences better than 1.0e-20: 1
length of query: 914
length of database: 10,358,551
effective HSP length: 16
effective length of query: 898
effective length of database: 10,329,639
effective search space: 9276015822
effective search space used: 9276015822
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)