BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC14ZA11RM1.SCF screened BAC_end
(930 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1527 1649 0.0
>3x_Contig1527
Length = 8131
Score = 1649 bits (832), Expect = 0.0
Identities = 876/887 (98%), Gaps = 3/887 (0%)
Strand = Plus / Minus
Query: 43 gcttgtgcttcctcatcatcacatatgagtggagcattcagctcttctgcagaaggatat 102
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 6723 gcttgtgcttcctcatcatcacagatgagtggagcattcagctcttctgcagaaggatat 6664
Query: 103 ggacctgtacccatcacagacacttcggtatatgattgttagaagatggtaatagagcgg 162
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6663 ggacctgtacccatcacagacacttcggtatatgattgttagaagatggtaatagagcgg 6604
Query: 163 tgtacctatagtatgtctatgataggccagtacgtttaggttgtgacccactttttttca 222
||||||||||||||||||||||||||||||||||||||||||||||||||| | || ||
Sbjct: 6603 tgtacctatagtatgtctatgataggccagtacgtttaggttgtgacccacgtcttaaca 6544
Query: 223 ataacattaactcttactcgaagcggttttttcagtttcataaacaccggaaaatctaaa 282
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6543 ataacattaactcttactcgaagcggttttttcagtttcataaacaccggaaaatctaaa 6484
Query: 283 aacatatcaaaaattagttacatacacgtaggtgcgtacaagtggggacatatttataaa 342
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6483 aacatatcaaaaattagttacatacacgtaggtgcgtacaagtggggacatatttataaa 6424
Query: 343 agataccctagcgacattaaacaccaaaagagaaaaagtgaaggaaatgagctgaatatc 402
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6423 agataccctagcgacattaaacaccaaaagagaaaaagtgaaggaaatgagctgaatatc 6364
Query: 403 tacactgatgctagaacccttgaaaaagggtaaggaatcaggaagaaaaacaactctaag 462
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6363 tacactgatgctagaacccttgaaaaagggtaaggaatcaggaagaaaaacaactctaag 6304
Query: 463 aaatattagtagttaaagtgtgactcaagaagtgaaagcttaattaaaggcctctgtaga 522
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6303 aaatattagtagttaaagtgtgactcaagaagtgaaagcttaattaaaggcctctgtaga 6244
Query: 523 atagagaaaagtattaggatcgaaaaaggacgatttggaacaatttctatgctaagagat 582
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6243 atagagaaaagtattaggatcgaaaaaggacgatttggaacaatttctatgctaagagat 6184
Query: 583 gtgtttatccggaacacatttcacaagcttctgggttatcaatagcacaagcaataacct 642
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6183 gtgtttatccggaacacatttcacaagcttctgggttatcaatagcacaagcaataacct 6124
Query: 643 tggagttgaaaatatcgaactcactagcgtcggttggggcttgtttaacatcctcggcat 702
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6123 tggagttgaaaatatcgaactcactagcgtcggttggggcttgtttaacatcctcggcat 6064
Query: 703 cctttgctgactcggcaggagtaactggagtgactggttgagtgtcatcaatttttaggg 762
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6063 cctttgctgactcggcaggagtaactggagtgactggttgagtgtcatcaatttttaggg 6004
Query: 763 atgctacgctgtttacgatagattcttcactagatggagctggagaaacttctttgaaag 822
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6003 atgctacgctgtttacgatagattcttcactagatggagctggagaaacttctttgaaag 5944
Query: 823 cctnncacagccggtgtcacacttttggtcattgacactggnctttatgaggaatgtaaa 882
||| ||||||||||||||||| |||||||||||||||||| ||||||||||||||||||
Sbjct: 5943 cct-ccacagccggtgtcacac-tttggtcattgacactgg-ctttatgaggaatgtaaa 5887
Query: 883 ctgggcggtttagtttaggaagatcaacaacactattagcagcttgt 929
|||||||||| ||||||| ||||||||||||||||||||||||||||
Sbjct: 5886 ctgggcggttaagtttagaaagatcaacaacactattagcagcttgt 5840
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6774
Number of Sequences: 1807
Number of extensions: 6774
Number of successful extensions: 41
Number of sequences better than 1.0e-20: 1
length of query: 930
length of database: 10,358,551
effective HSP length: 16
effective length of query: 914
effective length of database: 10,329,639
effective search space: 9441290046
effective search space used: 9441290046
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)