BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC14ZB01FM1.SCF screened BAC_end
(897 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1577 1550 0.0
>3x_Contig1577
Length = 10627
Score = 1550 bits (782), Expect = 0.0
Identities = 803/809 (99%), Gaps = 1/809 (0%)
Strand = Plus / Plus
Query: 87 cctttgagcatgaaccattattagaaggacagagatcagggaaatcttcgcatcgtaccc 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9653 cctttgagcatgaaccattattagaaggacagagatcagggaaatcttcgcatcgtaccc 9712
Query: 147 taggagccgttgcaccgcaaccgatcaatgtctctaattcgtcgtcgcctggggatgatt 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9713 taggagccgttgcaccgcaaccgatcaatgtctctaattcgtcgtcgcctggggatgatt 9772
Query: 207 tttccgacgatgattccgaattgcccagggatccttctgatctcttgtacagtgtcagac 266
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9773 tttccgacgatgattccgaattgcccagggatccttctgatctcttgtacagtgtcagac 9832
Query: 267 gaggttatcgaaatttcatccataaatcaaagactcttttgaatattatgatattcatca 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9833 gaggttatcgaaatttcatccataaatcaaagactcttttgaatattatgatattcatca 9892
Query: 327 ataccttgtggttagtgacaactttcatcagtgattttttcttcaacatcaactttttga 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9893 ataccttgtggttagtgacaactttcatcagtgattttttcttcaacatcaactttttga 9952
Query: 387 gaaacagaataaccggtttccaggacttgactcttatttttgtttcaattgttgccaaca 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9953 gaaacagaataaccggtttccaggacttgactcttatttttgtttcaattgttgccaaca 10012
Query: 447 gtttaactctatggtttaacaaaattggttattattcctctttggatcagtatttgaacg 506
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10013 gtttaactctatggtttaacaaaattggttattattcctctttggatcagtatttgaacg 10072
Query: 507 tggttctttgtggattgacattgttcaacttacttacaaatttacttgtgaaatacatcc 566
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10073 tggttctttgtggattgacattgttcaacttacttacaaatttacttgtgaaatacatcc 10132
Query: 567 gtcaacgtatcgggttattaggagtgtgcacttatttatgggctgcagtatcgtttgctg 626
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10133 gtcaacgtatcgggttattaggagtgtgcacttatttatgggctgcagtatcgtttgctg 10192
Query: 627 ttagtgctgtcatggatcgttatctatattacttcaatacaaagttccaccctaacaatt 686
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10193 ttagtgctgtcatggatcgttatctatattacttcaatacaaagttccaccctaacaatt 10252
Query: 687 acgatgacgctgaagcagataatgacgaaaattcaccgcatcctaacgaacatagtcaca 746
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10253 acgatgacgctgaagcagataatgacgaaaattcaccgcatcctaacgaacatagtcaca 10312
Query: 747 agagcatcagaaatcgtcacaccctaaccgaatgggttagtattgggtttaggacaactg 806
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 10313 agagcatcagaaatcgtcacaccctaaccgaatgggttagtattgggtttagaacaactg 10372
Query: 807 ttaaaggtgtgttgntagtatttttcattttgttcacattaaacaaggttcttttttttc 866
|||||||||||||| ||||||||||||||||||||||||||||||| |||||||| | ||
Sbjct: 10373 ttaaaggtgtgttgttagtatttttcattttgttcacattaaacaatgttcttttctctc 10432
Query: 867 ttgattccatattgaccacttaagcaggt 895
||||||||||||||||||| |||||||||
Sbjct: 10433 ttgattccatattgaccac-taagcaggt 10460
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7308
Number of Sequences: 1807
Number of extensions: 7308
Number of successful extensions: 59
Number of sequences better than 1.0e-20: 1
length of query: 897
length of database: 10,358,551
effective HSP length: 16
effective length of query: 881
effective length of database: 10,329,639
effective search space: 9100411959
effective search space used: 9100411959
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)