BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC14ZB01RM1.SCF screened BAC_end
(892 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1265 1493 0.0
>3x_Contig1265
Length = 8324
Score = 1493 bits (753), Expect = 0.0
Identities = 821/840 (97%), Gaps = 3/840 (0%)
Strand = Plus / Minus
Query: 43 gcttatcaattgatgacaagcattgtacctttgtggttggatacggcattcaaaacaaga 102
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 2000 gcttatcaattgatgacaagcaacgtacctttgtggttggatacggcattcaaaacaaga 1941
Query: 103 gattttcttagtaagtggttgggtgggatacagtcgattaagggttttgagggttctgcg 162
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1940 gattttcttagtaagtggttgggtgggatacagtcgattaagggttttgagggttctgcg 1881
Query: 163 aagcttttaaaagtaggcgataaagcagatttcttcgacgttgtcaaattgncgta-gat 221
|||| ||||||||||||||||||||||||||||||||||||||||| || || | |||
Sbjct: 1880 aagccgctaaaagtaggcgataaagcagatttcttcgacgttgtcaaagtgtcggatgat 1821
Query: 222 gaactatttttgaagtctactgacaagcatttaagtgtattggtagcattgcaaatcaag 281
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 1820 gaactatttttgaagtctactgacaagcatttaagtgtattggtagcattgctaatcaag 1761
Query: 282 aaccacgatgacctgagaaatgaattcagaatagccaccagtgtggttacctacaatttt 341
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 1760 aaccacgatgacctgagaaatgaattcagaatagccaccagtgtggtcacctacaatttt 1701
Query: 342 tttggcagggtgtacatgctgcctgtgtctatggcacatggctttattgttaggtccatg 401
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1700 tttggcagggtgtacatgctgcctgtgtctatggcacatggctttattgttaggtccatg 1641
Query: 402 ttggataaactcgagcccatttgaaacttatgccaacatatggtaaaaaatatggtggat 461
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1640 ttggataaactcgagcccatttgaaacttatgccaacatatggtaaaaaatatggtggat 1581
Query: 462 ctgtggtgtttgggcttgcagtcatataacaattaacatacataatatcatcactattac 521
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1580 ctgtggtgtttgggcttgcagtcatataacaattaacatacataatatcatcactattac 1521
Query: 522 atctttaaatctcggtcacctataccacctcagaaaatacagctctagagttgtcagctg 581
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1520 atctttaaatctcggtcacctataccacctcagaaaatacagctctagagttgtcagctg 1461
Query: 582 ataaatgctagctaggaattttgtataatacatcgtaatttacaggtaaatttctgcgat 641
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1460 ataaatgctagctaggaattttgtataatacatcgtaatttacaggtaaatttctgcgat 1401
Query: 642 gcctgtcaatacttttcaacaaaggcaatgcaagataaatcggtatggtcttgaaacctg 701
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1400 gcctgtcaatacttttcaacaaaggcaatgcaagataaatcggtatggtcttgaaacctg 1341
Query: 702 atattcctgcaataggaacgcatctgattctgccctacatgattttccggttaccctagt 761
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1340 atattcctgcaataggaacgcatctgattctgccctacatgattttccggttaccctagt 1281
Query: 762 taaataccaatggggctcatcatgaaatatttccatatcacgggcaaaataatggcattg 821
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 1280 taaataccaatggggctcatcatgaaatatttccatatcacgtgcaaaataatggcattg 1221
Query: 822 atttgacatttttaaaaacag-aattgcaggaaaccacaccacaaag-ttatacttaatg 879
||||||||||| ||||||||| ||| ||||||||||| ||||| || ||||||||||||
Sbjct: 1220 atttgacatttctaaaaacagaaatagcaggaaaccaacccacagagtttatacttaatg 1161
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6284
Number of Sequences: 1807
Number of extensions: 6284
Number of successful extensions: 33
Number of sequences better than 1.0e-20: 1
length of query: 892
length of database: 10,358,551
effective HSP length: 16
effective length of query: 876
effective length of database: 10,329,639
effective search space: 9048763764
effective search space used: 9048763764
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)