BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC14ZB03RM1.SCF screened BAC_end
(918 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1620 1507 0.0
>3x_Contig1620
Length = 12263
Score = 1507 bits (760), Expect = 0.0
Identities = 856/878 (97%), Gaps = 8/878 (0%)
Strand = Plus / Plus
Query: 43 gcttctggttgaacttcgagatttccaggaattgtactcttacaccttttaacatattcg 102
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 1946 gcttctggttgaacttcgagattgccaggaattgtactcttacaccttttaacatattcg 2005
Query: 103 tctaattcgctctctgccattttttcattattaacaatccaaaggccttccacagaagca 162
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2006 tctaattcgctctctgccattttttcattattaacaatccaaaggccttccacagaagca 2065
Query: 163 gaagtccctcgttctccaggtttattgctgtacggatcttccacccattgttgttttta- 221
||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
Sbjct: 2066 gaagtccctcgttctccaggtttattgctgtacggatcttccacccattgttgattacaa 2125
Query: 222 ttactccattggcccttttgtaaacttactctactttttttccatgggaatggtgcgata 281
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2126 ttactccattggcccttttgtaaacttactctactttttttccatgggaatggtgcgata 2185
Query: 282 tagtcgtcaaataatggatcacctaaatgattgcacatgtcttctcccagatactggaac 341
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2186 tagtcgtcaaataatggatcacctaaatgattgcacatgtcttctcccagatactggaac 2245
Query: 342 caccaattttctctgtttgtattgaaatctctgatagaagccaaactttctgttagcctt 401
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2246 caccaattttctctgtttgtattgaaatctctgatagaagccaaactttctgttagcctt 2305
Query: 402 tcaaccgaactttctattccttcccattctttgtccctcgtgatgtgctcttggttgttc 461
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2306 tcaaccgaactttctattccttcccattctttgtccctcgtgatgtgctcttggttgttc 2365
Query: 462 tgctttccgacacaatttgaacaaatccaaaccacaccttttgccggcttcttttctaag 521
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2366 tgctttccgacacaatttgaacaaatccaaaccacaccttttgccggcttcttttctaag 2425
Query: 522 ggcgggtccatgcaccacagatgaatcgatatcttacagtcatcacacttgatagaagac 581
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2426 ggcgggtccatgcaccacagatgaatcgatatcttacagtcatcacacttgatagaagac 2485
Query: 582 gattggtggcaccaatcgcgacattcgccgcaacgcanatcccagctttggtcttcggtt 641
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 2486 gattggtggcaccaatcgcgacattcgccgcaacgcaaatcccagctttggtcttcggtt 2545
Query: 642 cttttgccacagacatatttggtaagtaggttatccagtgggaatttatcctcatagaaa 701
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2546 cttttgccacagacatatttggtaagtaggttatccagtgggaatttatcctcatagaaa 2605
Query: 702 atgaatggggatttactagttaaaatcttgaaatacggtagatcagaagcaactcgcaca 761
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2606 atgaatgggaatttactagttaaaatcttgaaatacggtagatcagaagcaactcgcaca 2665
Query: 762 gccatctgatctgttttttccatttggtaatacttttagtgtatatctattgaaaagttg 821
||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||
Sbjct: 2666 gccatctgatctgttttttccatttggtaatac-tttagtgtatatctatcgaaaagttg 2724
Query: 822 gnttgaagtagnaaacaatggggtctttgagacgtaatctgttagcttgatcaattgagg 881
| ||||||||| ||||||| ||||| |||||||||| ||||||||| |||||||||||||
Sbjct: 2725 g-ttgaagtag-aaacaattgggtc-ttgagacgtattctgttagc-tgatcaattgagg 2780
Query: 882 ntaaancttttttgaaattgaaca-tacatttaccacg 918
|||| ||||||||||| ||| |||||||||||||
Sbjct: 2781 -taaattctttttgaaatttgacattacatttaccacg 2817
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6846
Number of Sequences: 1807
Number of extensions: 6846
Number of successful extensions: 40
Number of sequences better than 1.0e-20: 1
length of query: 918
length of database: 10,358,551
effective HSP length: 16
effective length of query: 902
effective length of database: 10,329,639
effective search space: 9317334378
effective search space used: 9317334378
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)