BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC14ZB06FM1.SCF screened BAC_end
(931 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1565 1570 0.0
>3x_Contig1565
Length = 10922
Score = 1570 bits (792), Expect = 0.0
Identities = 827/838 (98%), Gaps = 1/838 (0%)
Strand = Plus / Plus
Query: 86 acttattttgcttgcctttttcgagctactgtttcctaaatgcgcattgtatatacatca 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5664 acttattttgcttgcctttttcgagctactgtttcctaaatgcgcattgtatatacatca 5723
Query: 146 gagatgaccgccttttttctttttgcaatacaccgggaaaaagcctcagtcgacactgaa 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5724 gagatgaccgccttttttctttttgcaatacaccgggaaaaagcctcagtcgacactgaa 5783
Query: 206 atcgtacagcatacttggtccaaagggtgatactcctttaggctttgtcttttaggtccg 265
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5784 atcgtacagcatacgtggtccaaagggtgatactcctttaggctttgtcttttaggtccg 5843
Query: 266 ctgattactatcattcgaggaaaatagtatatacgttcccggaatgattttctcagccgg 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5844 ctgattactatcattcgaggaaaatagtatatacgttcccggaatgattttctcagccgg 5903
Query: 326 cattccgataaaagtcagaatagataggagggaggagaagcagctagagatagaagtaaa 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5904 cattccgataaaagtcagaatagataggagggaggagaagcagctagagatagaagtaaa 5963
Query: 386 tgtaggggaaggaagaaacgagttagtgcaaaatcaaagcgctgcaaactctcaacgcgc 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5964 tgtaggggaaggaagaaacgagttagtgcaaaatcaaagcgctgcaaactctcaacgcgc 6023
Query: 446 cacttctgctttaagaagaagcagaagaaagtatacgaaaggcggaaaatcagctcgttt 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6024 cacttctgctttaagaagaagcagaagaaagtatacgaaaggcggaaaatcagctcgttt 6083
Query: 506 ccaggcttcctgtaagcttcattgataagcttctgtccattaaatctactggaataaaac 565
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6084 ccaggcttcctgtaagcttcattgataagcttctgtccattaaatctactggaataaaac 6143
Query: 566 gctcagtttcagttggaaagaaaaaaaaaagacatattccgaccaatgagagcggttcag 625
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6144 gctcagtttcagttggaaagaaaaaaaaaagacatattccgaccaatgagagcggttcag 6203
Query: 626 ataattttgaagaagcgtaatattgagagggacaacaaactttttaccaacccatttctt 685
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6204 ataattttgaagaagcgtaatattgagagggacaacaaactttttaccaacccatttctt 6263
Query: 686 gttgtgatctttccttacctaaaggaaattgcaaaaagaaaaaaaagaaccgtcttcgaa 745
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6264 gttgtgatctttccttacctaaaggaaattgcaaaaagaaaaaaaagaaccgtcttcgaa 6323
Query: 746 tttcattccggccgatgagcaagtggtatttgggaggtaacgtatcgactagtagtttat 805
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6324 ttccattccggccgatgagcaagtggtatttgggaggtaacgtatcgactagtagtttat 6383
Query: 806 gcggggttttctactcaatcctttagaagcagcgctagaaagcanggnagcagaagacat 865
|| || ||| |||||||||||||||||||||||||||||| ||| || ||||||||||||
Sbjct: 6384 gc-ggttttcctactcaatcctttagaagcagcgctagaaggcaaggaagcagaagacat 6442
Query: 866 tttgtctacctttttacagattccaaacagttgatattttgggagggactttcggtaa 923
|||||||||||||| ||||||||||||||||||||||||||||| |||||||| ||||
Sbjct: 6443 tttgtctaccttttcacagattccaaacagttgatattttgggaaggactttccgtaa 6500
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8996
Number of Sequences: 1807
Number of extensions: 8996
Number of successful extensions: 110
Number of sequences better than 1.0e-20: 1
length of query: 931
length of database: 10,358,551
effective HSP length: 16
effective length of query: 915
effective length of database: 10,329,639
effective search space: 9451619685
effective search space used: 9451619685
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)