BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC14ZB06RM1.SCF screened BAC_end
(935 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1761 1338 0.0
>3x_Contig1761
Length = 23186
Score = 1338 bits (675), Expect = 0.0
Identities = 744/759 (98%), Gaps = 6/759 (0%)
Strand = Plus / Plus
Query: 45 gcttttatagtgntccttatacacgcacatatacacttatttatccaaaaaaaaatttag 104
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16943 gcttttatagtg-tccttatacacgcacatatacacttatttatccaaaaaaaaatttag 17001
Query: 105 gaattagcatattcgattgagaaatggtcagttagctacgttgatatggtaggctgttgc 164
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17002 gaattagcatattcgattgagaaatggtcagttagctacgttgatatggtaggctgttgc 17061
Query: 165 tatgccagaaaccccgtctaacttgacactttgtgttagctcacagaggaacatttttgt 224
||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 17062 tatgccagaaaccccgtctaacttgacactttgtgttagctcacagaggaacaaactgtc 17121
Query: 225 ttcatacaaattacaaaggaaatataagtcacgtgaaatcaaaatcacatgcctcaaata 284
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17122 gtcatacaaattacaaaggaaatataagtcacgtgaaatcaaaatcacatgcctcaaata 17181
Query: 285 tcatctccgggtaatctccggtcgacggaattcccactgttctcaacattttctttgagc 344
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17182 tcatctccgggtaatctccggtcgacggaattcccactgttctcaacattttctttgagc 17241
Query: 345 cgttttctcgaaattcattcttagtgtatggtaattgcggaagatccgagctgagtttaa 404
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17242 cgttttctcgaaattcattcttagtgtatggtaattgcggaagatccgagctgagtttaa 17301
Query: 405 taagtaaagtagtaaattcagagaagctttaatcgatgagtgtaatctttaaaatttcat 464
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17302 taagtaaagtagtaaattcagagaagctttaatcgatgagtgtaatctttaaaatttcat 17361
Query: 465 ctagatttcattttcctatctctgtgtgaattgtcaatctagtgggtctacttactttac 524
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17362 ctagatttcattttcctatctctgtgtgaattgtcaatctagtgggtctacttactttac 17421
Query: 525 attcttttggttctataatatctgcgcttttttctatttccgtcaaattcgaattataac 584
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17422 attcttttggttctataatatctgcgcttttttctatttccgtcaaattcgaattataac 17481
Query: 585 cattttaactgcaattataattacacaaatcttcatacgtgttcccaagatttgatataa 644
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17482 cattttaactgcaattataattacacaaatcttcatacgtgttcccaagatttgatataa 17541
Query: 645 agccatttggtattgccatcgctcttttccgcattactcagaattaagataatttattct 704
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 17542 agccatttggtattgccatcgctcttttccgcattactcagaattaagataa-ttattct 17600
Query: 705 aattcattgaccgag-atatacaggaccagtttgctccccgaag-ttacgaat-tttgct 761
|||||||||| |||| |||||||||||||||||||||||||||| |||||||| ||| ||
Sbjct: 17601 aattcattga-cgagaatatacaggaccagtttgctccccgaagtttacgaatatttcct 17659
Query: 762 atatctgttttgagatgagatttgtgttaagatccatcg 800
||||||||||||||||||||| |||||||||||||||||
Sbjct: 17660 atatctgttttgagatgagatatgtgttaagatccatcg 17698
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8266
Number of Sequences: 1807
Number of extensions: 8266
Number of successful extensions: 60
Number of sequences better than 1.0e-20: 1
length of query: 935
length of database: 10,358,551
effective HSP length: 16
effective length of query: 919
effective length of database: 10,329,639
effective search space: 9492938241
effective search space used: 9492938241
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)