BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC14ZB08FM1.SCF screened BAC_end
(928 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1580 1604 0.0
>3x_Contig1580
Length = 11743
Score = 1604 bits (809), Expect = 0.0
Identities = 836/841 (99%), Gaps = 3/841 (0%)
Strand = Plus / Plus
Query: 88 gaatgcatcatcatcttttatcgtacgattgtgtgaggagggaagaggatataaagccaa 147
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9229 gaatgcatcatcatcttttatcgtacgattgtgtgaggagggaagaggatataaagccaa 9288
Query: 148 agcgacaacaaaggtcatctgatttggaaaatcaatttggaccagcatctctaggattga 207
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9289 agcgacaacaaaggtcatctgatttggaaaatcaatttggaccagcatctctaggattga 9348
Query: 208 caaaaccagatgagaaggatgacttgactgtccattcaaacccaatatttgacgatccta 267
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9349 caaaaccagatgagaaggatgacttgactgtccattcaaacccaatatttgacgatccta 9408
Query: 268 ttggcagttatgggaagagttcaggtgcccgctttattagagataagttaaggtcaaata 327
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9409 ttggcagttatgggaagagttcaggtgcccgctttattagagataagttaaggtcaaata 9468
Query: 328 tatctttgcatgatgttatatccaatccagcggtggcgaccactatttcaaaagatgatt 387
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9469 tatctttgcatgatgttatatccaatccagcggtggcgaccactatttcaaaagatgatt 9528
Query: 388 cgatcgatgctgaatctactgaaggagattctgaaagaaaaccaaaagtacctgcatttg 447
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9529 cgatcgatgctgaatctactgaaggagattctgaaagaaaaccaaaagtacctgcatttg 9588
Query: 448 cacaattgggtgataacataacggaactattcaatacagtggcatccacattttcaaaaa 507
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9589 cacaattgggtgataacataacggaactattcaatacagtggcatccacattttcaaaaa 9648
Query: 508 aatcgtcagctacattgcgattgggttcagctgacgaaagtgtgtatgacactcatttct 567
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9649 aatcgtcagctacattgcgattgggttcagctgacgaaagtgtgtatgacactcatttct 9708
Query: 568 tggaaacaaaggtcccaagtgagatcaattcgttcgacatcagtccagtgtcaccgctca 627
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9709 tggaaacaaaggtcccaagtgagatcaattcgttcgacatcagtccagtgtcaccgctca 9768
Query: 628 accttcaaggtgggccatcaacagctgcttcattatctccaagatcaccaatggcaatcc 687
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9769 accttcaaggtgggccatcaacagctgcttcattatctccaagatcaccaatggcaatcc 9828
Query: 688 ctgcccagagtgcggttactccattgactgcaaatactgctggtacagcttcaacgaagc 747
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9829 ctgcccagagtgcggttactccattgactgcaaatactgctggtacagcttcaacgaagc 9888
Query: 748 ctagttggtttgatttttcaaataaggattctagttggtattcattgaagttcaaaaatt 807
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9889 ctagttggtttgatttttcaaataaggattctagttggtattcattgaagttcaaaaatt 9948
Query: 808 caaaggaaacatcaactagcgggatgatcaaccagttttttctttttaaacatttccagt 867
|||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||
Sbjct: 9949 caaaggaaacatcaactagc-ggatgatcaaccag-tttttctttttaaacatttccagt 10006
Query: 868 gattagaccatcgagcggtagtcatctacaaaggattttttttgttaacatggatagtga 927
||||||||||||||||||||||||||||||||||| |||||||| ||||||| |||||||
Sbjct: 10007 gattagaccatcgagcggtagtcatctacaaagga-tttttttggtaacatgaatagtga 10065
Query: 928 g 928
|
Sbjct: 10066 g 10066
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7703
Number of Sequences: 1807
Number of extensions: 7703
Number of successful extensions: 48
Number of sequences better than 1.0e-20: 1
length of query: 928
length of database: 10,358,551
effective HSP length: 16
effective length of query: 912
effective length of database: 10,329,639
effective search space: 9420630768
effective search space used: 9420630768
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)