BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC14ZB08RM1.SCF screened BAC_end
(919 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig625 938 0.0
>3x_Contig625
Length = 2660
Score = 938 bits (473), Expect = 0.0
Identities = 504/516 (97%), Gaps = 10/516 (1%)
Strand = Plus / Plus
Query: 45 gcttgaataaataataccttaatatctgatactacaaattgttctttatgctttgggttg 104
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 81 gcttgaataaataataccttaatatctgatactacaaattgttctttatgctttgggttg 140
Query: 105 gataaacctccgcttcttcacgactcatttcggttgccatgcatcagtaaaggtcgtttt 164
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 141 gataaacctccgcttcttcacgactcatttcggttgccatgcatcagtaaaggtcgtttt 200
Query: 165 cttttccttcctttaggtccactcttagcgagcctaatccaatatcaacaatttattctg 224
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 201 cttttccttcctttaggtccactcttagcgagcctaatccaatatcaacaatttacactg 260
Query: 225 ctgctgctgctgctaccactactagcacgactgcattgagctaacgacactcctcttgtt 284
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctgctgctgctgctaccactactagcacgactgcattgagctaacgacactcctcttgtt 320
Query: 285 cgtcgttcttactcactctttctctcctctcttatctgactcgcgcaagtacccttatcg 344
|||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 321 cgtcgttcttactcactctttctctcctctcttatctgac----------acccttatcg 370
Query: 345 ttatcatgatacagcttcttcttcatcttctaggcgaggaattggtcgaaacggaaaaaa 404
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 371 ttatcatgatacagcttcttcttcatcttctaggcgaggaattggtcgaaacggaaaaaa 430
Query: 405 gaaaaattttcgctgggaaaagctttcgttgcttggtttaatggaagggcattatctttg 464
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 431 gaaaaattttcgctgggaaaagctttcgttgcttggtttaatggaagggcattatctttg 490
Query: 465 gcactttgcgcaactgttaagcgagctataggtaaaagtcggaacggagagggccttgaa 524
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 491 gcactttgcgcaactgttaagcgagctataggtaaaagtcggaacggagagggccttgaa 550
Query: 525 aagtggtaactcgcttagcattgagtgatgatagtt 560
||||||||||||||||||||||||||||||||||||
Sbjct: 551 aagtggtaactcgcttagcattgagtgatgatagtt 586
Score = 585 bits (295), Expect = e-167
Identities = 316/322 (98%), Gaps = 1/322 (0%)
Strand = Plus / Plus
Query: 595 tattattattttcttttttttttccctttgcggttcttgtttcctgacggagatcactct 654
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 611 tattattattttcttttttttttccctttgcggttcttgtttcctgacggagatcactct 670
Query: 655 ttcactaacagagttgttttgatgcttgtgcaaatattttgataagttgattgaccggac 714
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 671 ttcactaacagagttgttttgatgcttgtgcaaatattttgataagttgattgaccggac 730
Query: 715 cagaccgccttaagggaacggtctctttctttttcccgttttcatttgcataagtttcca 774
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 731 cagaccgccttaagggaacggtctctttctttttccggttttcatttgcataagtttcca 790
Query: 775 ttcgagcancaaatatgaaatgagatgtgggtgtttgggtgttaataggaatgataattg 834
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 791 ttcgagcaacaaatatgaaatgagatgtgggtgtttgggtgttaataggaatgatatttg 850
Query: 835 cattaagttatttcagtgattgtataaatgtatgtaacaacagtgttggctagcttcaaa 894
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 851 cattaagttatttcagtgattgtataaatgtatgtaacaacagtgttggctagcttc-aa 909
Query: 895 aaaaaggtgtttggggccttca 916
||||| ||| ||||||||||||
Sbjct: 910 aaaaatgtggttggggccttca 931
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 10,696
Number of Sequences: 1807
Number of extensions: 10696
Number of successful extensions: 347
Number of sequences better than 1.0e-20: 1
length of query: 919
length of database: 10,358,551
effective HSP length: 16
effective length of query: 903
effective length of database: 10,329,639
effective search space: 9327664017
effective search space used: 9327664017
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)