BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC14ZC01FM1.SCF screened BAC_end
(939 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig373 1152 0.0
>3x_Contig373
Length = 2255
Score = 1152 bits (581), Expect = 0.0
Identities = 612/621 (98%), Gaps = 1/621 (0%)
Strand = Plus / Minus
Query: 90 cgtaatatttcacttggttcatcaacatgctccaacatttcaaacattgtcacaatatca 149
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1461 cgtaatatttcacttggttcatcaacatgctccaacatttcaaacattgtcacaatatca 1402
Query: 150 tagtggccatgaaccttctccaaaggcaagaacttatagaatattttatcctttatcgaa 209
||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||
Sbjct: 1401 tagtggccatgaaccttctccaaaggcaagattttttagaatattttatcctttatcgaa 1342
Query: 210 ggatcctttgctgtttgtgccttagccacctcaatacattctggagtcaaatcaattgct 269
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1341 ggatcctttgctgcatgtgccttagccacctcaatacattctggagtcaaatcaattgct 1282
Query: 270 gtgacactttgaatgaatggcaacctggcaaaagactctgacaatatacctcccccacag 329
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1281 gtgacactttgaatgaatggcaacctggcaaaagactctgacaatatacctcccccacag 1222
Query: 330 ccaatgtcaagggcatcgaattttttttcacccaatccacgttgcacttcattaaaaata 389
|||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||
Sbjct: 1221 ccaatgtcaagggcatcgaattttttttcacccaatcctcgt-gcacttcattaaaaata 1163
Query: 390 tcctggtcaattgccttggtaacgtaacctggtaaatgatcatgatgattgaatcccggg 449
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1162 tcctggtcaattgccttggtaacgtaacctggtaaatgatcatgatgattgaatcccggg 1103
Query: 450 atgtacacatcatcattcttgatctttatttgatttctaaccgttctttgcaaaaaatca 509
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1102 atgtacacatcatcattcttgatctttatttgatttctaaccgttctttgcaaaaaatca 1043
Query: 510 agcctagctaaattcatcttatgcaaaatcctctgagatccccaagtatcccaccatgtt 569
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1042 agcctagctaaattcatcttatgcaaaatcctctgagatccccaagtatcccaccatgtt 983
Query: 570 ggtgcaagctgctgaaaatgaaatatttcatcatctgatgtacttgtacctgatgattta 629
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 982 ggtgcaagctgctgaaaatgaaatatttcatcatctgatgtacttgtacctgatgattta 923
Query: 630 tcaaatgtcggattttgtgttggttttgggtgtgcatcattagatgatgaactgctatta 689
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 922 tcaaatgtcggattatgtgttggttttgggtgtgcatcattagatgatgaactgctatta 863
Query: 690 atgaacgctggattatttttt 710
|||||||||||||||| ||||
Sbjct: 862 atgaacgctggattatatttt 842
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7892
Number of Sequences: 1807
Number of extensions: 7892
Number of successful extensions: 47
Number of sequences better than 1.0e-20: 1
length of query: 939
length of database: 10,358,551
effective HSP length: 16
effective length of query: 923
effective length of database: 10,329,639
effective search space: 9534256797
effective search space used: 9534256797
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)