BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC14ZC01RM1.SCF screened BAC_end
(923 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1144 922 0.0
>3x_Contig1144
Length = 4618
Score = 922 bits (465), Expect = 0.0
Identities = 589/625 (94%), Gaps = 4/625 (0%)
Strand = Plus / Minus
Query: 84 tatgtgatttt-aaactgggactaat-aagggtaagacattaatcttcgttaacaatatc 141
||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 1224 tatgtgattttcaaactgggactaattaagggtaagacattaatcttcgttaacaatatc 1165
Query: 142 gatagaggatacattttaaagctagttttagaacagttcggtatcaaaccttgcattttg 201
||||||||||||| |||||||||||||||||||||| ||||| ||| |||||||||||
Sbjct: 1164 gatagaggatacagactaaagctagttttagaacagtttggtattaaatcttgcattttg 1105
Query: 202 aataatta-ctgccagcaaattcatgacagcatatcgtagaagaattcaacaagaacgtt 260
|| | | | ||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 1104 aacagtgaactgccagcaaattcaagacagcatatcgtagaagaattcaacaagaacgtt 1045
Query: 261 tatcaactgttaatagctacagacgatactgaatatatcaaagaagaagacgaagactta 320
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1044 tatcaactgttaatagctacagacgatactgaatatatcaaagaagaagacgaagactta 985
Query: 321 gaatcagaaaaaactgaggatggtttagttgaggttgccgatgattccactgtcactacg 380
||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||
Sbjct: 984 gaatcagaaaaaactgaggatggtttagttgaggttgtcgatgattccactgttactacg 925
Query: 381 aaagacaatgcaaagaaacaaaagaagccaaagctaaacgtggagaaagacaaagaatat 440
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 924 aaagacaatgcaaagaaacaaaagaagccaaagctaaacgtggagaaagacaaagaatat 865
Query: 441 ggtgtatctcgcggtgtggacctcaaaaatgttgcctgtgtattaaactttgatctacca 500
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 864 ggtgtatctcgcggtgtggacttcaaaaatgttgcctgtgtattaaactttgatctacca 805
Query: 501 accactgcaaaatcgtatgtacatagaagcggtagaacagctcgtgcagggaagccagga 560
|||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||
Sbjct: 804 accactgcaaaatcgtatgtacatagaattggtagaacagctcgtgcagggaagtcagga 745
Query: 561 atccctatttcctttgctggtccttcgaaggaattcgggaagcataaaccatctatgatc 620
|| ||||||| |||| || ||||| ||||||||||||||||||||||||||||||||||
Sbjct: 744 atttctatttcttttgttgttcctttgaaggaattcgggaagcataaaccatctatgatc 685
Query: 621 aagagtgcttagaaggatgaacagatactatggcccaatcacaaaacaacaggccaaatt 680
||||||||| ||||||||||| |||||||| ||| ||| | |||||||||||| |||||
Sbjct: 684 aagagtgctaagaaggatgaaaagatacta-ggcagaattataaaacaacaggctaaatt 626
Query: 681 aggcttcgaactacaggcctacaac 705
|||||| ||||||||| | ||||||
Sbjct: 625 aggctttgaactacagccttacaac 601
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5891
Number of Sequences: 1807
Number of extensions: 5891
Number of successful extensions: 55
Number of sequences better than 1.0e-20: 1
length of query: 923
length of database: 10,358,551
effective HSP length: 16
effective length of query: 907
effective length of database: 10,329,639
effective search space: 9368982573
effective search space used: 9368982573
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)