BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC14ZC02FM1.SCF screened BAC_end
         (907 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1708                                                         963   0.0  
3x_Contig1760                                                         644   0.0  

>3x_Contig1708 
          Length = 19451

 Score =  963 bits (486), Expect = 0.0
 Identities = 515/524 (98%), Gaps = 1/524 (0%)
 Strand = Plus / Plus

                                                                       
Query: 384 atctcatcgataaagagattgcatgtcgacgcagcaactgataaagaaatttttaaagtc 443
           |||||||||||||||||||||||| |  | ||||||||||||||| ||||||||||||||
Sbjct: 1   atctcatcgataaagagattgcatttgtaggcagcaactgataaataaatttttaaagtc 60

                                                                       
Query: 444 acgtgacaagtatcaacagtttctgaaaaaatctgaaaatctcaattacaaaaggtttct 503
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  acgtgacaagtatcaacagtttctgaaaaaatctgaaaatctcaattacaaaaggtttct 120

                                                                       
Query: 504 aatcgcaagcaattctcttgttattcggttcaacctgcatttaaactcgaattataccgt 563
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 aatcgcaagcaattctcttgttattcggttcaacctgcatttaaactcgaattataccgt 180

                                                                       
Query: 564 ctattgcctgattctctgactaagcgaagcagtttattatgtctaagttttatgacgatg 623
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 ctattgcctgattctctgactaagcgaagcagtttattatgtctaagttttatgacgatg 240

                                                                       
Query: 624 atgacgctgtggattatgacgacgatgtacctgatttccaggacgaggatgaatttgacg 683
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 atgacgctgtggattatgacgacgatgtacctgatttccaggacgaggatgaatttgacg 300

                                                                       
Query: 684 attatttaaacgatgaagaatttgaattgatgaaccagttgtttcccctggcgnaagagc 743
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||
Sbjct: 301 attatttaaacgatgaagaatttgaattgatgaaccagttgtttcccctggcgaaggagc 360

                                                                       
Query: 744 aattagctgattatcanggttgggataacttggccgtgaaagttgcgatttttgatcaca 803
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 aattagctgattatcagggttgggataacttggccgtgaaagttgcgatttttgatcaca 420

                                                                       
Query: 804 atttcgagttagaacctgcattggtcgatttaaagagaagattcaagaaaaagggtatgt 863
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 atttcgagttagaacctgcattggtcgatttaaagagaagattcaagaaaaagggtatgt 480

                                                       
Query: 864 ataattggcattggacgtggcgggtgttttatatttttacgtgt 907
           ||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 481 ataattggcattggacgtggc-ggtgttttatatttttacgtgt 523


>3x_Contig1760 
          Length = 27266

 Score =  644 bits (325), Expect = 0.0
 Identities = 338/341 (99%), Gaps = 1/341 (0%)
 Strand = Plus / Plus

                                                                         
Query: 83    ccccttccatagcaaatgctggggttcccacgctcttgcaatgctt-cgcggtacgatat 141
             |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 26926 ccccttccatagcaaatgctggggttcccacgctcttgcaatgctttcgcggtacgatat 26985

                                                                         
Query: 142   tatacaaaacacaactctgtatcactcgttgatgcgttgtcagcacattctccggaactg 201
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 26986 tatacaaaacacaactctgtatcactcgttgatgcgttgtcagcacattctccggaactg 27045

                                                                         
Query: 202   tcatccgaaaacttattggctatatcacttctgttctcttcaaaatattacctaggaaat 261
             |||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 27046 tcatccgaaaacgtatcggctatatcacttctgttctcttcaaaatattacctaggaaat 27105

                                                                         
Query: 262   tcaactcgttcacctgttaaatcacctaccgggaattaccttcttgaccaaaaaaagaat 321
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 27106 tcaactcgttcacctgttaaatcacctaccgggaattaccttcttgaccaaaaaaagaat 27165

                                                                         
Query: 322   gtactaatggacaaactgcactgtttacaactcacttcatgctatcgataacaactcatc 381
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 27166 gtactaatggacaaactgcactgtttacaactcacttcatgctatcgataacaactcatc 27225

                                                      
Query: 382   tcatctcatcgataaagagattgcatgtcgacgcagcaact 422
             |||||||||||||||||||||||||||||||||||||||||
Sbjct: 27226 tcatctcatcgataaagagattgcatgtcgacgcagcaact 27266


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7614
Number of Sequences: 1807
Number of extensions: 7614
Number of successful extensions: 309
Number of sequences better than 1.0e-20: 2
length of query: 907
length of database: 10,358,551
effective HSP length: 16
effective length of query: 891
effective length of database: 10,329,639
effective search space: 9203708349
effective search space used: 9203708349
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)