BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC14ZC02RM1.SCF screened BAC_end
(903 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1727 545 e-155
3x_Contig696 391 e-108
>3x_Contig1727
Length = 17872
Score = 545 bits (275), Expect = e-155
Identities = 290/294 (98%), Gaps = 1/294 (0%)
Strand = Plus / Minus
Query: 611 ccacccatgacacagaagacaccgaaagagaaaatccagactctgacaacggtaacgatg 670
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17862 ccacccatgacacagaagacaccgaaagagaaaatccagactctgacaacggtaacgatg 17803
Query: 671 tcgttccagttttgagaccaccaaccgaacaaacagaacatggttgcgatgatatcaacg 730
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17802 tcgttccagttttgagaccaccaaccgaacaaacagaacatggttgcgatgatatcaacg 17743
Query: 731 attagaacggcaccagataattgccaagatgggatagaggaccagaatggaccagcagct 790
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17742 attagaacggcaccagataattgccaagatgggatagaggaccagaatggaccagcagct 17683
Query: 791 ctggtgatgaaaatcaaccagttntcagtcaaggagatttgcaagaaacaaacaccatcg 850
||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||
Sbjct: 17682 ctggtgatgaaaatcaaccagttttcagtcaaggagatttgcaagaacaaaacaccatcg 17623
Query: 851 atggaaccgaagttttggataataccaccctttggaac-aacatagtggtcaag 903
|||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 17622 atggaaccgaagttttggataataccaccctttggaacaaacatagtggtcaag 17569
>3x_Contig696
Length = 2788
Score = 391 bits (197), Expect = e-108
Identities = 213/217 (98%), Gaps = 1/217 (0%)
Strand = Plus / Plus
Query: 40 gcttgtcttgacagtaaatagttagcagtttaaacccagtggaatttggtgtaaatgtga 99
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2570 gcttgtcttgacagtaaatagttagcagtttaaacccagtggaatttggtgtaaatgtga 2629
Query: 100 gggtaggaaggaaagagaaaaaaataaagctttatagttaaaatgaggcaaaaaaaacaa 159
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2630 gggtaggaaggaaagagaaaaaaataaagctttatagttaaaatgaggcaaaaaaaacaa 2689
Query: 160 ccacagagaaaataccagtcattgagctaaaaataatttcagatgacaacac-ttatttt 218
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
Sbjct: 2690 ccacagagaaaataccagtcattgagctaaaaataatttcagatgacaacacattactca 2749
Query: 219 tttaaacgcttcttaccattttcattcattcaaaaaa 255
|||||||||||||||||||||||||||||||||||||
Sbjct: 2750 tttaaacgcttcttaccattttcattcattcaaaaaa 2786
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 9213
Number of Sequences: 1807
Number of extensions: 9213
Number of successful extensions: 72
Number of sequences better than 1.0e-20: 2
length of query: 903
length of database: 10,358,551
effective HSP length: 16
effective length of query: 887
effective length of database: 10,329,639
effective search space: 9162389793
effective search space used: 9162389793
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)