BLASTN 2.2.3 [May-13-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= FJ0AC14ZC05FM1.SCF screened BAC_end (942 letters) Database: Klactis 3X assemblage 11/02 1807 sequences; 10,358,551 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value 3x_Contig1294 1019 0.0 >3x_Contig1294 Length = 6938 Score = 1019 bits (514), Expect = 0.0 Identities = 609/638 (95%), Gaps = 2/638 (0%) Strand = Plus / Minus Query: 90 attatccactgtattctttcttctccaatgggttaatgctaataaatatgtacagataca 149 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 5924 attagccactgtattctttcttctccaatgggttaatgctaataaatatgtacagataca 5865 Query: 150 tactaaaagttacaaattcattatctcaacgcaggttgaagttatccattattagtttcg 209 |||||||||||||||||||| || |||||||||||||||||||||||||||||||||||| Sbjct: 5864 tactaaaagttacaaattcaataactcaacgcaggttgaagttatccattattagtttcg 5805 Query: 210 ggatacattgctccctatttatctcatcatctatcaattttagagcggatattcccatca 269 ||||||| || ||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct: 5804 ggatacagagcaccccatttatctcatcatctatcaattttagagcggatattcccatca 5745 Query: 270 tgctatgatatatatcagggtcatcttgatcattcttggcaaatccacccaccatcttat 329 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 5744 tgctatgatatatatcagggtcatcttgatcattcttggcaaatccacccaccatcttat 5685 Query: 330 tctgagtttgattcagtaaataatctcgtatcagtggaacatcaataagctgactccaac 389 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 5684 tctgagtttgattcagtaaataatctcgtatcagtggaacatcaataagctgactccaac 5625 Query: 390 gttggggctctaagattcttaaagaatttaaacaccaaaacgcgtagtacgtatccgcaa 449 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct: 5624 gttggggctctaagattcttaaagaatttaaacaccaaaacgcgtagcacgtatccgcaa 5565 Query: 450 gtttatttttttttccgttaaacccacctgagtcatccggatcgtaatcgtcgtttaaat 509 ||||||||| | | |||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 5564 gtttattttctctcccgttaaacccacctgagtcatccggatcgtaatcgtcgtttaaat 5505 Query: 510 cctgtacaacaaagacaccaatagcagaaacctgtctgttcaccaaccaatgaagagtat 569 ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 5504 cctgttcaacaaagacaccaatagcagaaacctgtctgttcaccaaccaatgaagagtat 5445 Query: 570 cctgcctaaacgaggcaggaatgttctgctgttgatttagttgagatagagcagattact 629 ||||||||||||||||||||||||| || ||||||||||| |||||||||||||| || Sbjct: 5444 cctgcctaaacgaggcaggaatgttttgtagttgatttagtagagatagagcagataacg 5385 Query: 630 cgcatgatgtgtatccaccgtgtggatttgtccagtcaccaaatccccctattgtgcact 689 ||||||||||||||||||||||||| | ||||||||||||||||||| |||||| ||| Sbjct: 5384 cgcatgatgtgtatccaccgtgtggctcgttccagtcaccaaatccccccattgtg-act 5326 Query: 690 gacttgacatgatattttgtatcagtcttacaaacgtt 727 ||| ||||||||||| ||||| ||| |||| ||||||| Sbjct: 5325 gacgtgacatgatatattgtagcag-cttagaaacgtt 5289 Database: Klactis 3X assemblage 11/02 Posted date: Nov 27, 2002 12:23 PM Number of letters in database: 10,358,551 Number of sequences in database: 1807 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 6941 Number of Sequences: 1807 Number of extensions: 6941 Number of successful extensions: 46 Number of sequences better than 1.0e-20: 1 length of query: 942 length of database: 10,358,551 effective HSP length: 16 effective length of query: 926 effective length of database: 10,329,639 effective search space: 9565245714 effective search space used: 9565245714 T: 0 A: 40 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 50 (99.6 bits)