BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC14ZC06RM1.SCF screened BAC_end
(939 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1299 1687 0.0
>3x_Contig1299
Length = 7525
Score = 1687 bits (851), Expect = 0.0
Identities = 888/895 (99%), Gaps = 4/895 (0%)
Strand = Plus / Minus
Query: 46 gcttattaaatacagagtacacgatgagatgataaagaggtgtccactagaggaccaaga 105
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 945 gcttattaaatacagagtacacgatgagatgataaagaggtgtccactagaggaccaaga 886
Query: 106 tattgatcataacctcacgaccaatgaccgtggagatgacagatgaggaaaatatatggg 165
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 885 tattgatcataacctcacgaccaatgaccgtggagatgacagatgaggaaaatatatggg 826
Query: 166 gctctgataatgaggccagtaccggtcctcaagagtcgctagaagtgaagaaacttcaac 225
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 825 gctctgataatgaggccagtaccggtcctcaagagtcgctagaagtgaagaaacttcaac 766
Query: 226 aaatacattcgaaaagagggtatttagatggtatttcgtcagcgaaggaggaaaacttgc 285
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 765 aaatacattcgaaaagagggtatttagatggtatttcgtcagcgaaggaggaaaacttgc 706
Query: 286 aagctgggtttgacgataccttccccttgggtgctaagtatgggtttcaaataggggaaa 345
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 705 aagctgggtttgacgataccttccccttgggtgctaagtatgggtttcaaataggggaaa 646
Query: 346 ttgtgggtaaattgaggctatttaccacgctttatgggaatgcagaccctcaagttgctg 405
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 645 ttgtgggtaaattgaggctatttaccacgctttatgggaatgcagaccctcaagttgctg 586
Query: 406 cagacttaaagcaagctcaagacgaactacggattaacagggtgttgtccgctagacact 465
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 585 cagacttaaagcaagctcaagacgaactacggattaacagggtgttgtccgctagacact 526
Query: 466 tcgatgaagaattacaacctttagattcattgaaggtactcctatccaaatggcaagctc 525
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 525 tcgatgaagaattacaacctttagattcattgaaggtactcctatccaaatggcaagctc 466
Query: 526 gggtattggattatgaaggtaagtattcttgatgagtatgatttttattttgataaataa 585
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 465 gggtattggattatgaaggtaagtattcttgatgagtatgatttttattttgataaataa 406
Query: 586 tgacaggtatacgcaccttcttacaaatacatagtgtataagaagatataatgattcaat 645
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 405 tgacaggtatacgcaccttcttacaaatacatagtgtataagaagatataatgattcaat 346
Query: 646 agtctataatgcttttagcgatgttctttttgtttaggtatcaccagaacgaacaccagc 705
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 345 agtctataatgcttttagcgatgttctttttgtttaggtatcaccagaacgaacaccagc 286
Query: 706 cgatgtaatgttgacataggttttctactgatgtagcttgctggatcaacttgtcgactt 765
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 285 cgatgtaatgttgacataggttttctactgatgtagcttgctggatcaacttgtcgactt 226
Query: 766 gatcaggcacagatagttcttgataccttgggaaatcgttaccagtaagtttatcagcga 825
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 225 gatcaggcacagatagttcttgataccttgggaaatcgttaccagtaagtttatcagcga 166
Query: 826 ttcttttgagaac-agagtggctcttgcgttgcggacttctgccttttgttgta-tttca 883
||||||||||||| |||||||||||||||||||||||||||||||||||||||| || ||
Sbjct: 165 ttcttttgagaacaagagtggctcttgcgttgcggacttctgccttttgttgtagttcca 106
Query: 884 tcttggccgcatcttc-acggggatgacgccctttctta-ttactcacttggatt 936
|||||||||||||||| |||| ||||||||||||||||| | |||||||||||||
Sbjct: 105 tcttggccgcatcttcaacggtgatgacgccctttcttagtaactcacttggatt 51
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6483
Number of Sequences: 1807
Number of extensions: 6483
Number of successful extensions: 38
Number of sequences better than 1.0e-20: 1
length of query: 939
length of database: 10,358,551
effective HSP length: 16
effective length of query: 923
effective length of database: 10,329,639
effective search space: 9534256797
effective search space used: 9534256797
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)