BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC14ZC08FM1.SCF screened BAC_end
(909 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig386 1586 0.0
>3x_Contig386
Length = 1502
Score = 1586 bits (800), Expect = 0.0
Identities = 818/823 (99%), Gaps = 1/823 (0%)
Strand = Plus / Minus
Query: 88 cttatcaaaatcacctgcctttttcttgttgtttggaattatacaacgaacgaaatgggg 147
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 958 cttatcaaaatcacctgcctttttcttgttgtttggaattatacaacgaacgaaatgggg 899
Query: 148 atccgtattgccaagctgttcaatgagtgtatggagctgttccctatgtttgttagatga 207
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 898 atccgtattgccaagctgttcaatgagtgtatggagctgttccctatgtttgttagatga 839
Query: 208 tgtcctaaaagaactgcctctaatgcgatctgcgaaaaattgtgataccagagggttcgc 267
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 838 tgtcctaaaagaactgcctctaatgcgatctgcgaaaaattgtgataccagagggttcgc 779
Query: 268 acaatcattgagtacctgcaataaattttcatttaaaggatctttattctttgatagcca 327
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 778 acaatcattgagtacctgcaataaattttcatttaaaggatctttattctttgatagcca 719
Query: 328 atcagtaacgttgtattcaacatcacctgcataatgctttagtataaagcagttatccag 387
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 718 atcagtaacgttgtattcaacatcacctgcataatgctttagtataaagcagttatccag 659
Query: 388 cttagaccttttgaatttagtggatttattatcccaagatgaaagtaatttcgaataaaa 447
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 658 cttagaccttttgaatttagtggatttattatcccaagatgaaagtaatttcgaataaaa 599
Query: 448 agaggcatctgaagattttggtaagatcgattcttcttctaaaatcggtagtatacctgg 507
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 598 agaggcatctgaagattttggtaagatcgattcttcttctaaaatcggtagtatacctgg 539
Query: 508 aatgctgctgtttttctgttcaattaaatcaattgtggtttgtaagtctttgccataatc 567
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 538 aatgctgctgtttttctgttcaattaaatcaattgtggtttgtaagtctttgccataatc 479
Query: 568 gatgaaattccattggatgtcttccttttgatattcattttgttccaatacaaacatatg 627
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 478 gatgaaattccattggatgtcttccttttgatattcattttgttccaatacaaacatatg 419
Query: 628 atgattgaaaaactgttgtaatttctcatttgtgtaattgatacatagttgttcgaaaga 687
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 418 atgattgaaaaactgttgtaatttctcatttgtgtaattgatacatagttgttcgaaaga 359
Query: 688 attatctttgaaaatttcgaacccagcgatatccaataatccaataaaatattcagtcat 747
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 358 attatctttgaaaatttcgaacccagcgatatccaataatccaataaaatattcagtcat 299
Query: 748 cgatccatgctctaaactcttgttaatttgatttacaatatattcgaaaagcttctcata 807
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 298 cgatccatgctctaaactcttgttaatttgatttacaatatattcgaaaagcttctcata 239
Query: 808 taatgatcgggataaagagttaagaattgaccttgcctgtngagcatttttggcttgtga 867
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 238 taatgatcgggataaagagttaagaattgaccttgcctgtgaggcatttttggcttgtga 179
Query: 868 tacccattcttta-cagcctttgatttatgttttagaacagct 909
||||||||||||| |||||||||||||| ||||||||||||||
Sbjct: 178 tacccattctttaccagcctttgatttaggttttagaacagct 136
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8096
Number of Sequences: 1807
Number of extensions: 8096
Number of successful extensions: 55
Number of sequences better than 1.0e-20: 1
length of query: 909
length of database: 10,358,551
effective HSP length: 16
effective length of query: 893
effective length of database: 10,329,639
effective search space: 9224367627
effective search space used: 9224367627
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)