BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC14ZC09RM1.SCF screened BAC_end
(933 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1612 1618 0.0
>3x_Contig1612
Length = 15608
Score = 1618 bits (816), Expect = 0.0
Identities = 878/895 (98%), Gaps = 3/895 (0%)
Strand = Plus / Minus
Query: 41 gcttatattcttgaaaaaaa-gaattctttgagaaaaatcaatattaaaaattaatatta 99
|||||||||||||||||||| ||| |||||||| ||| ||||| |||||||||||
Sbjct: 12850 gcttatattcttgaaaaaaatgaaatctttgaggaaagtcaatggggggaattaatatta 12791
Query: 100 ttatgcggagactcgtgttgagcgacgcgagtcaaccaaattttgacttgacatggcatt 159
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12790 ttatgcggagactcgtgttgagcgacgcgagtcaaccaaattttgacttgacatggcatt 12731
Query: 160 acggagatttattgaaggagtaaatcaaaatccataagagaaaagctctatgttcatatt 219
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 12730 acggagatttattgaaggagtaaatcaaaatccataagagaaaagctctatgttcagatt 12671
Query: 220 gaagaagctccatgttagatgtatacatttacatacgcttacggatcttcagatatttat 279
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12670 gaagaagctccatgttagatgtatacatttacatacgcttacggatcttcagatatttat 12611
Query: 280 agggttacaagtgtagagatgcagtttctttttcaatacttgattctacagagtgttgag 339
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12610 agggttacaagtgtagagatgcagtttctttttcaatacttgattctacagagtgttgag 12551
Query: 340 cttcggttcagttctcttgagcttgttgctgacgcaatttgaaagccatgaactctacac 399
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12550 cttcggttcagttctcttgagcttgttgctgacgcaatttgaaagccatgaactctacac 12491
Query: 400 taggtcttaaacctttggggaaagagcttgggaaggtttcctcttcgtcttcatcttctt 459
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12490 taggtcttaaacctttggggaaagagcttgggaaggtttcctcttcgtcttcatcttctt 12431
Query: 460 ctttttctttggattcgtcattttctgtagcagtgacatcggtatctgtagatttctctg 519
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12430 ctttttctttggattcgtcattttctgtagcagtgacatcggtatctgtagatttctctg 12371
Query: 520 ttttttgtttcttgaaccacctgttcaatggaacgtcagttcctgagtttagtaatctct 579
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12370 ttttttgtttcttgaaccacctgttcaatggaacgtcagttcctgagtttagtaatctct 12311
Query: 580 cagacacaacaacgcttggtcctctgaaccatagaggttcacccttggctcttcttcttc 639
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12310 cagacacaacaacgcttggtcctctgaaccatagaggttcacccttggctcttcttcttc 12251
Query: 640 tgggtacgttatccttacctaatctcctgatttgactgctgtagtcagctctttgtaaaa 699
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12250 tgggtacgttatccttacctaatctcctgatttgactgctgtagtcagctctttgtaaaa 12191
Query: 700 gttcaatgttctttgtgagtggtatagggagtatgcaagcagatggtgcatcaacgacta 759
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12190 gttcaatgttctttgtgagtggtatagggagtatgcaagcagatggtgcatcaacgacta 12131
Query: 760 tatgtccccgta-gtcctcctgcattcttcatttgtgttattagatcgttaatgattgct 818
||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12130 tatgt-cccgtaggtcctcctgcattcttcatttgtgttattagatcgttaatgattgct 12072
Query: 819 gtggaacgatatgggataggcttcgagccatcgccagcggnagtagatatagaaccttta 878
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 12071 gtggaacgatatgggataggcttcgagccatcgccagcggaggtagatatagaaccttta 12012
Query: 879 ccatgtacagtaccgagttgagattgcagcatcaactgttgttggagctgttgtt 933
||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12011 ccatgaccagtaccgagttgagattgcagcatcaactgttgttggagctgttgtt 11957
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 9300
Number of Sequences: 1807
Number of extensions: 9300
Number of successful extensions: 123
Number of sequences better than 1.0e-20: 1
length of query: 933
length of database: 10,358,551
effective HSP length: 16
effective length of query: 917
effective length of database: 10,329,639
effective search space: 9472278963
effective search space used: 9472278963
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)