BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC14ZC10FM1.SCF screened BAC_end
(919 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1329 1176 0.0
>3x_Contig1329
Length = 7405
Score = 1176 bits (593), Expect = 0.0
Identities = 631/641 (98%), Gaps = 2/641 (0%)
Strand = Plus / Minus
Query: 74 ttcttcgaaaagaccccattatagattcgacttgggttcagttcatttgtcttatcgtta 133
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6440 ttcttcgaaaagaccccattatagattcgacttgggttcagttcatttgtcttatcgtta 6381
Query: 134 ctgatttggtaaaactcatgctcgcggaaccattctggacatgttttgttcccacccatt 193
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6380 ctgatttggtaaaactcatgctcgcggaaccattctggacatgttttgttcccacccatt 6321
Query: 194 aaagacattgtaagcttcactagcttgctgtatgacatatatttgataaactgttcagca 253
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6320 aaagacattgtaagcttcactagcttgctgtatgacatatatttgataaactgttcagca 6261
Query: 254 ccaatcttggcgacctctggttctcttaaaataagaggattttttatccagtgagtctgc 313
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6260 ccaatcttggcgacctctggttctcttaaaataagaggattttttatccagtgagtctgc 6201
Query: 314 aacctttgcaaaacatgatgaattttttggtcaagaatcttcaatcgaagtgagctgatt 373
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6200 aacctttgcaaaacatgatgaattttttggtcaagaatcttcaatcgaagtgagctgatt 6141
Query: 374 tcaccatttattttttgcttgtcagcagcttctaacaatttagtaactttcttattagtc 433
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6140 tcaccatttattttttgcttgtcagcagcttctaacaatttagtaactttcttattagtc 6081
Query: 434 tttctgctcttcgagttgaagaactgcaaagtttgcttgaaccttggttggaactgttca 493
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6080 tttctgctcttcgagttgaagaactgcaaagtttgcttgaaccttggttggaactgttca 6021
Query: 494 gcttcattgttcatataatgaatttggtattccaaattgtccagcttgaaaatcagatta 553
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6020 gcttcattgttcatataatgaatttggtattccaaattgtccagcttgaaaatcagatta 5961
Query: 554 tctttacccatatctatcaaactcaaagtgcttggtttcggttgaccgtacttaactgag 613
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5960 tctttacccatatctatcaaactcaaagtgcttggtttcggttgaccgtacttaactgag 5901
Query: 614 ccggtgtcttcgtcgttgaatcgatgagatgcttattttttatgccatgagctcttggaa 673
||||||||||||||||||||||||||||||||| |||| |||||| ||||||||||||||
Sbjct: 5900 ccggtgtcttcgtcgttgaatcgatgagatgct-atttcttatgcgatgagctcttggaa 5842
Query: 674 aattttctgaatgaat-ttatttgatagtttaataagaaat 713
||||||||| | |||| ||| || |||||||||||||||
Sbjct: 5841 aattttctgcaagaatattaaaggaaagtttaataagaaat 5801
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8048
Number of Sequences: 1807
Number of extensions: 8048
Number of successful extensions: 50
Number of sequences better than 1.0e-20: 1
length of query: 919
length of database: 10,358,551
effective HSP length: 16
effective length of query: 903
effective length of database: 10,329,639
effective search space: 9327664017
effective search space used: 9327664017
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)