BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC14ZC10RM1.SCF screened BAC_end
(913 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1123 1606 0.0
>3x_Contig1123
Length = 7020
Score = 1606 bits (810), Expect = 0.0
Identities = 857/869 (98%), Gaps = 3/869 (0%)
Strand = Plus / Plus
Query: 44 gcttcggtgtaccatttgatatatttttctaacaaatttatgttcttgttggcaacgtct 103
|||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||
Sbjct: 5303 gcttcggtgtaccatttgatatcatcttctaacaaatttatgttcttgttggcaacgtct 5362
Query: 104 agtagttgatcacgattttctttagcattttctttcacttggatgctatgagattgcaac 163
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5363 agtagttgatcacgattttctttagcattttctttcacttggatgctatgagattgcaac 5422
Query: 164 cagtcgtaaatgtcatccgaagaccaagaatcaaataggtcgctctttaatttgttggac 223
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5423 cagtcgtaaatgtcatccgaagaccaagaatcaaataggtcgctctttaatttgttggac 5482
Query: 224 ttatcatatagttgtttcttggccaaatctaacgattccaatgcactcaatctctcctca 283
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5483 ttatcatatagttgtttcttggccaaatctaacgattccaatgcactcaatctctcctca 5542
Query: 284 gagtaaacttgagaggccttgtaaatgttttttctaacaagggacaacaattcttccttg 343
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5543 gagtaaacttgagaggccttgtaaatgttttttctaacaagggacaacaattcttccttg 5602
Query: 344 ttagccttagccttgtcataagtgacaccgtgcttatctaaccaggctttcaagtcataa 403
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5603 ttagccttagccttgtcataagtgacaccgtgcttatctaaccaggctttcaagtcataa 5662
Query: 404 tcatcccattgattgaagtaggattcagtcgaatagtaaccggaactacccagcttttta 463
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5663 tcatcccattgattgaagtaggattcagtcgaatagtaaccggaactacccagcttttta 5722
Query: 464 ttgattttatcgaaattctccttggccaatgacttcaaattgtcataagaagtatcggtg 523
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5723 ttgattttatcgaaattctccttggccaatgacttcaaattgtcataagaagtatcggtg 5782
Query: 524 tcgaacttgacaccagcgttcctcaaggttttcctcaaatccttcgcagaccaagtgtca 583
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5783 tcgaacttgacaccagcgttcctcaaggttttcctcaaatccttcgcagaccaagtgtca 5842
Query: 584 aataaccaattggaaatagactcagttgtgcttggttctgattggaagttccaccagtta 643
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5843 aataaccaattggaaatagactcagttgtgcttggttctgattggaagttccaccagtta 5902
Query: 644 tcttgatccctttcatccggccagactttccaccacggttttggttgcgcatgctcagac 703
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5903 tcttgatccctttcatccggccagactttccaccacggttttggttgcgcatgctcagac 5962
Query: 704 catttctgactagcgntagccttcaatttcttcaagtgaagtgtctgcatcctttttagc 763
||||||||||||||| || ||||||| |||||||||||||||||||||||||||||||||
Sbjct: 5963 catttctgactagcg-taaccttcaa-ttcttcaagtgaagtgtctgcatcctttttagc 6020
Query: 764 agagtcaccagtgtcctttaaatattgaataatgtcttgactagaccaattttcaaatag 823
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 6021 agagtcaccagtgtccttcaaatattgaataatgtcttgactagaccaattttcaaatag 6080
Query: 824 attgttgcaaataactacttggcaagcagctgcacaaaatttcanagcactactaagcct 883
|||||||||||||||||||||||||||||||||||||||| ||| |||||||||||| ||
Sbjct: 6081 attgttgcaaataactacttggcaagcagctgcacaaaatatcaaagcactactaag-ct 6139
Query: 884 tcaacctgcggattaatattgttattctg 912
||| |||||| ||||||||||||||||||
Sbjct: 6140 tcatcctgcgtattaatattgttattctg 6168
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6869
Number of Sequences: 1807
Number of extensions: 6869
Number of successful extensions: 46
Number of sequences better than 1.0e-20: 1
length of query: 913
length of database: 10,358,551
effective HSP length: 16
effective length of query: 897
effective length of database: 10,329,639
effective search space: 9265686183
effective search space used: 9265686183
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)