BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC14ZC11FM1.SCF screened BAC_end
(913 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1501 1560 0.0
>3x_Contig1501
Length = 10010
Score = 1560 bits (787), Expect = 0.0
Identities = 813/821 (99%), Gaps = 1/821 (0%)
Strand = Plus / Plus
Query: 89 ttactgggaatgacagacggacttcttctgatgcaatgctgaagcatcataagggaattc 148
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6210 ttactgggaatgacagacggacttcttctgatgcaatgctgaagcatcataagggaattc 6269
Query: 149 tgagaattaaacccaggccaggcaatcatacctttgagcaactctactatggaattccag 208
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6270 tgagaattaaacccaggccaggcaatcatacctttgagcaactctactatggaattccag 6329
Query: 209 ttattttcgaggattgtgttgctcataggctcaaaatcaggcaagtcgataccaattgtt 268
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6330 ttattttcgaggattgtgttgctcataggctcaaaatcaggcaagtcgataccaattgtt 6389
Query: 269 gataaagctttcaatggttggaatcctatagatcggcgtggggatgagttttcctcatct 328
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6390 gataaagctttcaatggttggaatcctatagatcggcgtggggatgagttttcctcatct 6449
Query: 329 gaaaagagtcgaataatcctgggaagtatttggtgagcttgaggtcccaagataggcaat 388
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6450 gaaaagagtcgaataatcctgggaagtatttggtgagcttgaggtcccaagataggcaat 6509
Query: 389 aaagttggttggtttattctctggaaaagaggtttaagaataacttcgaaaagcaaagcg 448
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6510 aaagttggttggtttattctctggaaaagaggtttaagaataacttcgaaaagcaaagcg 6569
Query: 449 aatctctttgagctcatatccttataatcgcagcatgtcaaatacattatactattgaag 508
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6570 aatctctttgagctcatatccttataatcgcagcatgtcaaatacattatactattgaag 6629
Query: 509 gcgaaaatgatatattctgataaaccttcattgtccggaaactcaaagggcctcatgaca 568
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6630 gcgaaaatgatatattctgataaaccttcattgtccggaaactcaaagggcctcatgaca 6689
Query: 569 atttgtatcaatgcatccaaaacatggttatcgatatcatgcgtaatagtagtgataatc 628
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6690 atttgtatcaatgcatccaaaacatggttatcgatatcatgcgtaatagtagtgataatc 6749
Query: 629 atatagtttaatatcctcctattcttgatagctatgcctctcagatttgattttttggaa 688
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6750 atatagtttaatatcctcctattcttgatagctatgcctctcagatttgattttttggaa 6809
Query: 689 ttaaagcaaacatcattaaccgccaaccaacgacttccaacaggttctaacagtaacgac 748
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6810 ttaaagcaaacatcattaaccgccaaccaacgacttccaacaggttctaacagtaacgac 6869
Query: 749 agatntttggttgaattgaatagcaatcccgtcatgcctaaccaaaagtccatgngaaag 808
|||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 6870 agatttttggttgaattgaatagcaatcccgtcatgcctaaccaaaagtccatggaaagt 6929
Query: 809 ttgtactcctccttgtcattcataagagaaatgagtttgttgcataaagctgtgcccagt 868
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 6930 ttgtactcctccttgtcattcataagagaaatgagtttgttgcataaagctgtgccaagt 6989
Query: 869 gtttgggtcttttatgaattctgtgtattccacatctactt 909
|||| ||||||| ||||||||||||||||||||||||||||
Sbjct: 6990 gttt-ggtctttaatgaattctgtgtattccacatctactt 7029
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5869
Number of Sequences: 1807
Number of extensions: 5869
Number of successful extensions: 44
Number of sequences better than 1.0e-20: 1
length of query: 913
length of database: 10,358,551
effective HSP length: 16
effective length of query: 897
effective length of database: 10,329,639
effective search space: 9265686183
effective search space used: 9265686183
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)