BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC14ZC12FM1.SCF screened BAC_end
(943 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1512 1544 0.0
>3x_Contig1512
Length = 8803
Score = 1544 bits (779), Expect = 0.0
Identities = 828/843 (98%), Gaps = 1/843 (0%)
Strand = Plus / Plus
Query: 86 ttgagaagattatatatatggcattgcctgcctctaatgatctggctactgatactatag 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5142 ttgagaagattatatatatggcattgcctgcctctaatgatctggctactgatactatag 5201
Query: 146 agaatagggtacaggcaggtgcaggaagacctggcttgtctgtgccgataatgagtagga 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5202 agaatagggtacaggcaggtgcaggaagacctggcttgtctgtgccgataatgagtagga 5261
Query: 206 acttcgtgcatattatttcgaggcttggcgccccattcatgatcattgatgagataataa 265
|||||||||| || | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5262 acttcgtgcagatgaattcgaggcttggcgccccattcatgatcattgatgagataataa 5321
Query: 266 ggatcttcaattggactaatgcagcttatactttatgcataatgtcattctattcgtttc 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5322 ggatcttcaattggactaatgcagcttatactttatgcataatgtcattctattcgtttc 5381
Query: 326 tagtgttgaaaccattaccagtgcttgtatcgggtcctttcgtgtacattctatttggca 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5382 tagtgttgaaaccattaccagtgcttgtatcgggtcctttcgtgtacattctatttggca 5441
Query: 386 tcatgtcaccaacgtatatggatatacataagcctgatcctcacatgaacttagatcata 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5442 tcatgtcaccaacgtatatggatatacataagcctgatcctcacatgaacttagatcata 5501
Query: 446 acccaattcctgctcgcgggcctccgttgaaaaatccacaattgccaggtcctgttccag 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5502 acccaattcctgctcgcgggcctccgttgaaaaatccacaattgccaggtcctgttccag 5561
Query: 506 agtttagcaaggagttcatattaaacttaactgacttgcagaaccatatgacgttatatg 565
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5562 agtttagcaaggagttcatattaaacttaactgacttgcagaaccatatgacgttatatg 5621
Query: 566 tgatggcatacgatttcgtatcgaattttttggctaagtttgcatactttaagaacgaga 625
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5622 tgatggcatacgatttcgtatcgaattttttggctaagtttgcatactttaagaacgaga 5681
Query: 626 atgtcagttcggccgtatttctaggactactgctattctcttgtatcaattcgctagcta 685
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5682 atgtcagttcggccgtatttctaggactactgctattctcttgtatcaattcgctagcta 5741
Query: 686 ttgatagtatttcctcgctaataccttggaaattcatctttttatgtgccggatggactt 745
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5742 ttgatagtatttcctcgctaataccttggaaattcatctttttatgtgccggatggactt 5801
Query: 746 tttgtatatcgttacatccaaagataagggacaccatgtttaatttgatgtattcagagg 805
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5802 ttgtaatatcgttacatccaaagataagggacaccatgtttaatttgatgtattcagagg 5861
Query: 806 agacacggttaaggatacttaccaagatgaaccacatagagcgtattataaacgattaat 865
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 5862 agacacggttaaggatacttaccaagatgaaccacatagagcgtattataaacgataaat 5921
Query: 866 ttgattcttatgaacccagaggaagaaaaagaagcttcgaatttccagcttaagagtttc 925
||||||||||||||||||||| ||| || ||||||||||| ||| ||||| |||| |||
Sbjct: 5922 ttgattcttatgaacccagagaaag-aagagaagcttcgatattcgagcttcagaggttc 5980
Query: 926 aat 928
|||
Sbjct: 5981 aat 5983
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5815
Number of Sequences: 1807
Number of extensions: 5815
Number of successful extensions: 35
Number of sequences better than 1.0e-20: 1
length of query: 943
length of database: 10,358,551
effective HSP length: 16
effective length of query: 927
effective length of database: 10,329,639
effective search space: 9575575353
effective search space used: 9575575353
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)