BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC14ZC12RM1.SCF screened BAC_end
         (933 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1708                                                        1629   0.0  

>3x_Contig1708 
          Length = 19451

 Score = 1629 bits (822), Expect = 0.0
 Identities = 879/891 (98%), Gaps = 6/891 (0%)
 Strand = Plus / Minus

                                                                         
Query: 43    cttgtgctagtttgttcaagttttttaaagatacaccacctaaagtatctctaatatgtt 102
             |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 17815 cttgtgctagtttgttcaagttttctaaagatacaccacctaaagtatctctaatatgtt 17756

                                                                         
Query: 103   ccaccatcgattgtgcattatattccacaatagatttaccgataactttaatacatatat 162
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17755 ccaccatcgattgtgcattatattccacaatagatttaccgataactttaatacatatat 17696

                                                                         
Query: 163   cctgcaatgatgaaatgagtgagtccttcttgtctaaaagattggcagcctttnttcntc 222
             ||||||||||||||||||||||||||||||||||||||||||||||||||||  ||| ||
Sbjct: 17695 cctgcaatgatgaaatgagtgagtccttcttgtctaaaagattggcagccttctttcttc 17636

                                                                         
Query: 223   tagttttcttctgttgatggcgagccttagctagttgcggagaagttttcttaccattag 282
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17635 tagttttcttctgttgatggcgagccttagctagttgcggagaagttttcttaccattag 17576

                                                                         
Query: 283   tcaaggtcaacatccttttctttcgatcagaaaccggcaatacttcttcttcctcatcag 342
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17575 tcaaggtcaacatccttttctttcgatcagaaaccggcaatacttcttcttcctcatcag 17516

                                                                         
Query: 343   aatcttctaggtcagcaccacgtaaccggcgaagcctcgcctctgctttgtagtcatcgt 402
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17515 aatcttctaggtcagcaccacgtaaccggcgaagcctcgcctctgctttgtagtcatcgt 17456

                                                                         
Query: 403   catcttcgtcgtcgtcgtcctcatcatcatcactttctccggaagaagacgactcctgct 462
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17455 catcttcgtcgtcgtcgtcctcatcatcatcactttctccggaagaagacgactcctgct 17396

                                                                         
Query: 463   tcttaacagctctgggctttcttgaccgtttttttgcagctacccctgctttaagatctt 522
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17395 tcttaacagctctgggctttcttgaccgtttttttgcagctacccctgctttaagatctt 17336

                                                                         
Query: 523   catcagattctgtttcagaatcatccttctgagtttcttgtggatgttcggcttccttct 582
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17335 catcagattctgtttcagaatcatccttctgagtttcttgtggatgttcggcttccttct 17276

                                                                         
Query: 583   tttgagcttctaaccatctatctctaatattctcagcactaataccttgttcctttaaaa 642
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17275 tttgagcttctaaccatctatctctaatattctcagcactaataccttgttcctttaaaa 17216

                                                                         
Query: 643   actgggtcaaagcactgtttggtcctcttacgccactaccatcgttgttccgacgactcc 702
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17215 actgggtcaaagcactgtttggtcctcttacgccactaccatcgttgttccgacgactcc 17156

                                                                         
Query: 703   ttgctctatacatgtcgatatctcgtggaatagccccttaaccgccagtcgagactacct 762
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17155 ttgctctatacatgtcgatatctcgtggaatagccccttaaccgccagtcgagactacct 17096

                                                                         
Query: 763   tatctaccagcaacttcattgagatgagatgagattaagttntgattaattatttgctaa 822
             ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 17095 tatctaccagcaacttcattgagatgagatgagattaagttttgattaattatttgctaa 17036

                                                                         
Query: 823   c-ataatttcagacactgcaaacaataatgatgctactgatgagaaaaaaagc-aga-tt 879
             | ||||||||||||||||||||||||||||||||||||||||||||||||||| |||  |
Sbjct: 17035 caataatttcagacactgcaaacaataatgatgctactgatgagaaaaaaagcaagagat 16976

                                                                
Query: 880   atgcgaggagaa-tatgctagaaga-tcacggaacctgca-gtgggctgtt 927
             |||||||||||| |||||||||||| |||||||||||||| ||||||||||
Sbjct: 16975 atgcgaggagaagtatgctagaagattcacggaacctgcaggtgggctgtt 16925


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8337
Number of Sequences: 1807
Number of extensions: 8337
Number of successful extensions: 313
Number of sequences better than 1.0e-20: 1
length of query: 933
length of database: 10,358,551
effective HSP length: 16
effective length of query: 917
effective length of database: 10,329,639
effective search space: 9472278963
effective search space used: 9472278963
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)