BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC14ZD02FM1.SCF screened BAC_end
         (927 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1571                                                        1558   0.0  

>3x_Contig1571 
          Length = 13536

 Score = 1558 bits (786), Expect = 0.0
 Identities = 829/840 (98%), Gaps = 3/840 (0%)
 Strand = Plus / Minus

                                                                        
Query: 88   gatccatactctttctctaacctctccgtgaaaacagatgcgtgaagagatcctaaaaat 147
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1597 gatccatactctttctctaacctctccgtgaaaacagatgcgtgaagagatcctaaaaat 1538

                                                                        
Query: 148  cctaatctccaaccttggcctagtgcatttgacgtttctctttggagggacactgatcta 207
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1537 cctaatctccaaccttggcctagtgcatttgacgtttctctttggagggacactgatcta 1478

                                                                        
Query: 208  tcatttaagacgagtctactaatatcatcgtctaacgctttgaattcggccccatcagca 267
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1477 tcatttaagacgagtctactaatatcatcgtctaacgctttgaattcggccccatcagca 1418

                                                                        
Query: 268  gggaaagctcctacgaagaccatgggttttggttcttcaaatcctggtaacacttcagta 327
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1417 gggaaagctcctacgaagaccatgggttttggttcttcaaatcctggtaacacttcagta 1358

                                                                        
Query: 328  atcgattctttaccgagatgcatcaaagtatcaccaatcttggcatccttagattctttc 387
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1357 atcgattctttaccgagatgcatcaaagtatcaccaatcttggcatccttagattctttc 1298

                                                                        
Query: 388  atgccaggtaccaaatacccgacttgacctgatttcagtgtgttagtagcgacacgatct 447
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1297 atgccaggtaccaaatacccgacttgacctgatttcagtgtgttagtagcgacacgatct 1238

                                                                        
Query: 448  gggtacattataccgcattccctcacttcatacttcaatccatttgcggcagtgatgatt 507
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1237 gggtacattataccgcattccctcacttcatacttcaatccatttgcggcagtgatgatt 1178

                                                                        
Query: 508  ttatctcctcttttcacttgaccatcaactatatgtacaagaagcaccactcctaaataa 567
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1177 ttatctcctcttttcacttgaccatcaactatatgtacaagaagcaccactcctaaataa 1118

                                                                        
Query: 568  gagtcataccacgaatccaccaataatgcacgtaatggtttctcaactttaccggtcgga 627
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1117 gagtcataccacgaatccaccaataatgcacgtaatggtttctcaactttaccggtcgga 1058

                                                                        
Query: 628  ggaggtattctatcaacaatagcgggtaacaattgctcgacgtgcaatccagttttagca 687
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1057 ggaggtattctatcaacaatagcgggtaacaattgctcgacgtgcaatccagttttagca 998

                                                                        
Query: 688  ctaactttgatacaatctgacttaggtagctcgaacatattttcaacctgttcttctgct 747
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 997  ctaactttgatacaatctgacttaggtagctcgaacatattttcaacctgttcttctgct 938

                                                                        
Query: 748  tggtcaatgtcagcaatgtccaagtcaatcttgtttatgacaggaataagtttcaaatcc 807
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 937  tggtcaatgtcagcaatgtccaagtcaatcttgtttatgacaggaataagtttcaaatcc 878

                                                                        
Query: 808  atactataangcgagtaanaagtttgcgactgtctgtgcttgtacacctttggnaagcgt 867
            ||||||||| |||||  | ||||||||||||||||||||||| ||||| |||| ||||||
Sbjct: 877  atactataa-gcgaggtaaaagtttgcgactgtctgtgcttgaacacc-ttgggaagcgt 820

                                                                        
Query: 868  caacgagttacaaagcg-caccacacgatgcatacgatcttgaaactttagcacggaaat 926
            |||||||| |||||||| |||||||||||||||||||||||||||||| |||||| ||||
Sbjct: 819  caacgagtaacaaagcgccaccacacgatgcatacgatcttgaaacttcagcacgaaaat 760


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5057
Number of Sequences: 1807
Number of extensions: 5057
Number of successful extensions: 34
Number of sequences better than 1.0e-20: 1
length of query: 927
length of database: 10,358,551
effective HSP length: 16
effective length of query: 911
effective length of database: 10,329,639
effective search space: 9410301129
effective search space used: 9410301129
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)