BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC14ZD03FM1.SCF screened BAC_end
(951 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1093 1590 0.0
>3x_Contig1093
Length = 5169
Score = 1590 bits (802), Expect = 0.0
Identities = 850/861 (98%), Gaps = 4/861 (0%)
Strand = Plus / Plus
Query: 88 ttacaggatatgggtaacaatgaagaatctataacagttggtttcaacgaaatcgtcgat 147
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1065 ttacaggatatgggtaacaatgaagaatctataacagttggtttcaacgaaatcgtcgat 1124
Query: 148 cttttaagccatgggaaagatgaatatatgctgttcgtatgcaataaagatttgccgtca 207
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1125 cttttaagccatgggaaagatgaatatatgctgttcgtatgcaataaagatttgccgtca 1184
Query: 208 gttttaatttcgtttttacctatcttatgtgaaacctcggaccatacagtgacgcttgtc 267
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1185 gttttaatttcgcagttacctatcttatgtgaaacctcggaccatacagtgacgcttgtc 1244
Query: 268 caattacctcgactctcgtcggccaagttcgatgacgcgttcagggatgtagtgcatgac 327
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1245 caattacctcgactctcgtcggccaagttcgatgacgcgttcagggatgtagtgcatgac 1304
Query: 328 ggtatgtgtcttgtgcgcacacatgctcattatcaggattttgcaaagatgatctctacc 387
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1305 ggtatgtgtcttgtgcgcacacatgctcattatcaggattttgcaaagatgatctctacc 1364
Query: 388 aaagtggaaccattatccataccatggctgcattctgcacagttcaaaaaggctcccgtc 447
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1365 aaagtggaaccattatccataccatggctgcattctgcacagttcaaaaaggctcccgtc 1424
Query: 448 aagctattggcaaccaccgcaccgatcataaagaaacaagggaaacaagggaaacaagtg 507
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1425 aagctattggcaaccaccgcaccgatcataaagaaacaagggaaacaagggaaacaagtg 1484
Query: 508 ccatcctaaatggtaattgggctctccattttctgtccacgtgacctttataagcccatt 567
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1485 ccatcctaaatggtaattgggctctccattttctgtccacgtgacctttataagcccatt 1544
Query: 568 tttcccacagatttcaccatctaaattttccagaaattttcattaaccgtcgagatgaca 627
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1545 tttcccacagatttcaccatctaaattttccagaaattttcattaaccgtcgagatgaca 1604
Query: 628 ttaaaacagagatgcatatatatatatgggaaccaatatcgttgacggtttttacagtta 687
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1605 ttaaaacagagatgcatatatatatatgggaaccaatatcgttgacggtttttacagtta 1664
Query: 688 cgtttatctcccggcaaccgtttactaacgcttctttaagctttgtggtcgcatactgag 747
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1665 cgtttatctcccggcaaccgtttactaacgcttctttaagctttgtggtcgcatactgag 1724
Query: 748 tttagttgtattcagaccaagtgtgtgtctaattctcagtgtgtggattggttgcttgcg 807
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1725 tttagttgtattcagaccaagtgtgtgtctaattctcagtgtgtggattggttgcttgcg 1784
Query: 808 ctttctttgcttctcaa-gaaatcgaattgcttaaataaggtttcgtcttatcagaacca 866
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1785 ctttctttgcttctcaaggaaatcgaattgcttaaataaggtttcgtcttatcagaacca 1844
Query: 867 tggtagttttaaacccttac-actgncactgggtcgat-aaaattcactgggatggacca 924
||||||||||||||||| || |||| |||||||||||| ||||| |||||||||||||||
Sbjct: 1845 tggtagttttaaaccctaacaactggcactgggtcgataaaaatacactgggatggacca 1904
Query: 925 acgatt-tttgaatcgccgtt 944
|||||| ||||||||| ||||
Sbjct: 1905 acgattatttgaatcgtcgtt 1925
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8166
Number of Sequences: 1807
Number of extensions: 8166
Number of successful extensions: 64
Number of sequences better than 1.0e-20: 1
length of query: 951
length of database: 10,358,551
effective HSP length: 16
effective length of query: 935
effective length of database: 10,329,639
effective search space: 9658212465
effective search space used: 9658212465
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)