BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC14ZD05RM1.SCF screened BAC_end
(926 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1711 1600 0.0
>3x_Contig1711
Length = 15491
Score = 1600 bits (807), Expect = 0.0
Identities = 840/850 (98%), Gaps = 1/850 (0%)
Strand = Plus / Plus
Query: 48 tagactataacatcttctgtttcttgttgtgattgatatgaaacataactgcgcattctt 107
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13707 tagactataacatcttctgtttcttgttgtgattgatatgaaacataactgcgcattctt 13766
Query: 108 gttatattgtaatatggtagagtttgcaattgatttatctgtataccagatatataatct 167
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13767 gttatattgtaatatggtagagtttgcaattgatttatctgtataccagatatataatct 13826
Query: 168 tgcgcataattcacacaaattaatgttacaactttagtgtcatcttcattgtatatacac 227
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 13827 tgcgcataattcacacaaattaatgttacaactttagtgtcatcttcatagtatatacac 13886
Query: 228 aagcgtcttttacagtgtttattacaggaatgttggtttagtgttacaaataaaagcgga 287
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13887 aagcgtcttttacagtgtttattacaggaatgttggtttagtgttacaaataaaagcgga 13946
Query: 288 atataaataacatcgaaattgaagcttccaatgaaacttgtgtatgcttttcaaatcgtt 347
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13947 atataaataacatcgaaattgaagcttccaatgaaacttgtgtatgcttttcaaatcgtt 14006
Query: 348 agatatataacgaccgaagtactttttttatcgtattccggggtggttgtttgcatctga 407
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14007 agatatataacgaccgaagtactttttttatcgtattccggggtggttgtttgcatctga 14066
Query: 408 agcgtcctatacactagtctcaaaaaaatggaataactcctaatcttcctgtcatttatc 467
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14067 agcgtcctatacactagtctcaaaaaaatggaataactcctaatcttcctgtcatttatc 14126
Query: 468 tacagatcctttatctgacccatatgttgttgaccctgcatcgctgaagttgaatgcttt 527
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14127 tacagatcctttatctgacccatatgttgttgaccctgcatcgctgaagttgaatgcttt 14186
Query: 528 gtttgtgggtgtttgactgacattgatgtagggcgataatccaggacttccattgcttac 587
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14187 gtttgtgggtgtttgactgacattgatgtagggcgataatccaggacttccattgcttac 14246
Query: 588 aacatgctgctgttggtgttgctgaccagatgtctgatcattacttggttgttgttgttg 647
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14247 aacatgctgctgttggtgttgctgaccagatgtctgatcattacttggttgttgttgttg 14306
Query: 648 atgttgttgttgttgttgttgttgttgntgatgttgttgcagagattgttgttgagaagt 707
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 14307 atgttgttgttgttgttgttgttgttgttgatgttgttgcagagattgttgttgagaagt 14366
Query: 708 gcttgtcattgcctgacgttgccctgtcgggagtaatgagttgtgctgttgtgacgctcc 767
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14367 gcttgtcattgcctgacgttgccctgtcgggagtaatgagttgtgctgttgtgacgctcc 14426
Query: 768 agtttgttgatgagacatctgcagatgaagtaaagaactgttcgatcgacccgtggttct 827
|||||||||||||||||||||||||||| |||||||||||||||||||||||| ||| ||
Sbjct: 14427 agtttgttgatgagacatctgcagatgaggtaaagaactgttcgatcgacccgcggtact 14486
Query: 828 tggatttggagggaatggccattcttggaccatgcccccaattgatgtttttgtgagact 887
|| |||||||||||||||||||||||||| |||||| ||||||||||| |||| ||||||
Sbjct: 14487 tgtatttggagggaatggccattcttggaacatgccaccaattgatgtatttg-gagact 14545
Query: 888 gtacaatcaa 897
||||||||||
Sbjct: 14546 gtacaatcaa 14555
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 9459
Number of Sequences: 1807
Number of extensions: 9459
Number of successful extensions: 953
Number of sequences better than 1.0e-20: 1
length of query: 926
length of database: 10,358,551
effective HSP length: 16
effective length of query: 910
effective length of database: 10,329,639
effective search space: 9399971490
effective search space used: 9399971490
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)