BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC14ZD06RM1.SCF screened BAC_end
(951 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1690 1663 0.0
>3x_Contig1690
Length = 13018
Score = 1663 bits (839), Expect = 0.0
Identities = 887/898 (98%), Gaps = 4/898 (0%)
Strand = Plus / Minus
Query: 44 gctttgtctgacccttcggtgattcaacaggtcagacaattgattgttcatgaactttgt 103
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6929 gctttgtctgacccttcggtgattcaacaggtcagacaattgattgttcatgaactttgt 6870
Query: 104 catcaatggatgggtaactacatctcgtttgactcctgggatcatctttggtttaacgaa 163
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6869 catcaatggatgggtaactacatctcgtttgactcctgggatcatctttggtttaacgaa 6810
Query: 164 gcttttgcgacgtggttcgcatgtgacttgttggacgaacacgataatgatggatattgg 223
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6809 gcttttgcgacgtggttcgcatgtgacttgttggacgaacacgataatgatggatattgg 6750
Query: 224 tcttcagacgtctatctaacccagatggaaaatgtcatatcaactgacgctgaagtaact 283
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6749 tcttcagacgtctatctaacccagatggaaaatgtcatatcaactgacgctgaagtaact 6690
Query: 284 accaagagtatcacacaaggttcggtaatcgacgtgaaatccttgcaatcaacttcagat 343
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6689 accaagagtatcacacaaggttcggtaatcgacgtgaaatccttgcaatcaacttcagat 6630
Query: 344 gcatttgaaccacacatatatcataagggaatatcgttattgagatcactccaacaaagt 403
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6629 gcatttgaaccacacatatatcataagggaatatcgttattgagatcactccaacaaagt 6570
Query: 404 gttgggaaagaaaacttcaacagagctctcgcccagatcttctcagagtcgtccacattc 463
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6569 gttgggaaagaaaacttcaacagagctctcgcccagatcttctcagagtcgtccacattc 6510
Query: 464 catgaaacttgtatcaaaccaatggatatctttagaagaatgggcgagatcctaaaatcc 523
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6509 catgaaacttgtatcaaaccaatggatatctttagaagaatgggcgagatcctaaaatcc 6450
Query: 524 gaaaacattgcaaacttctacagctcatggactaggactcctggtatcccaatcatttct 583
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6449 gaaaacattgcaaacttctacagctcatggactaggactcctggtatcccaatcatttct 6390
Query: 584 gtaaatactgatactgaaaggactaccttggaacagcaccgtttccttttggaaaagaca 643
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6389 gtaaatactgatactgaaaggactaccttggaacagcaccgtttccttttggaaaagaca 6330
Query: 644 gatgttgaggacattccttaccatattccactttttgcagttcaatcttcaggagaggat 703
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6329 gatgttgaggacattccttaccatattccactttttgcagttcaatcttcaggagaggat 6270
Query: 704 gatactaagaatggattatntactgatagaactctgaaattatccgaacccgaacttatt 763
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 6269 gatactaagaatggattatttactgatagaactctgaaattatccgaacccgaacttatt 6210
Query: 764 gtgaacagtggagccaggggcctataccgtgtttcttatgagacgggataatgctacgag 823
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 6209 gtgaacagtggagccaggggcctataccgtgtttcttatgagacggataaatgctacgag 6150
Query: 824 ttgatcaatgaagccctc-agaactctaaaatttccgatttgggattattc-aaatattc 881
|||||||||||||||||| |||||||||||||||||||||||| |||||| ||||||||
Sbjct: 6149 ttgatcaatgaagccctcaagaactctaaaatttccgatttggatttattcaaaatattc 6090
Query: 882 attgacctgagatctttaata-gcagtgaataccaaa-aaagatacacatcgatggtg 937
||||||||||||||| ||||| ||||||||||||||| ||||||||||||||||||||
Sbjct: 6089 attgacctgagatctctaataggcagtgaataccaaagaaagatacacatcgatggtg 6032
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6417
Number of Sequences: 1807
Number of extensions: 6417
Number of successful extensions: 41
Number of sequences better than 1.0e-20: 1
length of query: 951
length of database: 10,358,551
effective HSP length: 16
effective length of query: 935
effective length of database: 10,329,639
effective search space: 9658212465
effective search space used: 9658212465
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)