BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC14ZD07RM1.SCF screened BAC_end
(881 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1235 1649 0.0
>3x_Contig1235
Length = 6673
Score = 1649 bits (832), Expect = 0.0
Identities = 840/843 (99%)
Strand = Plus / Minus
Query: 39 gctttgcaaggactcttgttgattgctgtatattctttgatgagacctacggttcctggg 98
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6130 gctttgcaaggactcttgttgattgctgtatattctttgatgagacctacggttcctggg 6071
Query: 99 ttgtggtacactcttggatctgctattagattatgtgtggatctgggtctacacgctgaa 158
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6070 ttgtggtacactcttggatctgctattagattatgtgtggatctgggtctacacgctgaa 6011
Query: 159 aaactcaacaaaaactatgaaccttttataagagatgttcgtaggcggcttttctggtgt 218
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6010 aaactcaacaaaaactatgaaccttttataagagatgttcgtaggcggcttttctggtgt 5951
Query: 219 tgttactcaatggataggcaggtatgtgcatattttggaagacctgtcagcattcctgat 278
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5950 tgttactcaatggataggcaggtatgtgcatattttggaagacctgtcagcattcctgat 5891
Query: 279 gtaaatgtgacaactatgtttccaagctccctagatgatgcgttgattaccactgcagaa 338
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5890 gtaaatgtgacaactatgtttccaagctccctagatgatgcgttgattaccactgcagaa 5831
Query: 339 gataatgtcagagattattcgtccccgtcactagttaactctgacccaacttacaaatct 398
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5830 gataatgtcagagattattcgtccccgtcactagttaactctgacccaacttacaaatct 5771
Query: 399 gtatgtctatcgatgttccaaataagaaaaatacaatcagaaattgtgcaaagaatgtat 458
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5770 gtatgtctatcgatgttccaaataagaaaaatacaatcagaaattgtgcaaagaatgtat 5711
Query: 459 gctcctaacgcaaccattcctgatgagtttttagatttagaagattggaggatagctatc 518
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5710 gctcctaacgcaaccattcctgatgagtttttagatttagaagattggaggatagctatc 5651
Query: 519 cttaatcaactagatgtttggtttcagagagttatcccaaagacatccatacagatgaac 578
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5650 cttaatcaactagatgtttggtttcagagagttatcccaaagacatccatacagatgaac 5591
Query: 579 tgttcatttccgatagacttctttgctctaaattatcactatacaaagcatattttgtat 638
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5590 tgttcatttccgatagacttctttgctctaaattatcactatacaaagcatattttgtat 5531
Query: 639 ggtttatctcctaaatgtcctaccctgaacaatgctggtttcattgttgtgtacgagagc 698
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5530 ggtttatctcctaaatgtcctaccctgaacaatgctggtttcattgttgtgtacgagagc 5471
Query: 699 tccatggatatcgctaatataaactacaaattaactctagagaaaaaattgaattatact 758
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5470 tccatggatatcgctaatataaactacaaattaactctagagaaaaaattgaattatact 5411
Query: 759 tgggtagccattcacaatgtgttcatgtgcggtatgacttatctgtacgtgatatatcac 818
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5410 tgggtagccattcacaatgtgttcatgtgcggtatgacttatctgtacgtgatatatcac 5351
Query: 819 acgaaacaatttgacgatgctattccaacanaattcgaggaaatatggcacaaaattctt 878
|||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||
Sbjct: 5350 acgaaacaatttgacgatgctattccaacaaaattcgaggaaatatgcaacaaaattctt 5291
Query: 879 ctt 881
|||
Sbjct: 5290 ctt 5288
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6101
Number of Sequences: 1807
Number of extensions: 6101
Number of successful extensions: 30
Number of sequences better than 1.0e-20: 1
length of query: 881
length of database: 10,358,551
effective HSP length: 16
effective length of query: 865
effective length of database: 10,329,639
effective search space: 8935137735
effective search space used: 8935137735
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)