BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC14ZD09FM1.SCF screened BAC_end
         (953 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig343                                                         1298   0.0  

>3x_Contig343 
          Length = 1398

 Score = 1298 bits (655), Expect = 0.0
 Identities = 664/667 (99%)
 Strand = Plus / Plus

                                                                        
Query: 89   tatcttcacgaaggggatgactttacgattcaaatctccagatgcagatgtaatccgtag 148
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 732  tatcttcacgaaggggatgactttacgattcaaatctccagatgcagatgtaatccgtag 791

                                                                        
Query: 149  ttgggtacagtccatcaacgagttattaccacacttgaacaattatggctctgaatctga 208
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 792  ttgggtacagtccatcaacgagttattaccacacttgaacaattatggctctgaatctga 851

                                                                        
Query: 209  ccttgagattgtttaatccgatgacgaacaaattgaaggggaacaagctgatgaacatgg 268
            |||||||||||   ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 852  ccttgagattgcagaatccgatgacgaacaaattgaaggggaacaagctgatgaacatgg 911

                                                                        
Query: 269  gatacagaaaacaactcaagtcgttaaagaaaataaagataccaattccacttctgatat 328
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 912  gatacagaaaacaactcaagtcgttaaagaaaataaagataccaattccacttctgatat 971

                                                                        
Query: 329  aaaatctattaataacggagttgtcgaagaagacaagaagtttttcgagttttatgacgc 388
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 972  aaaatctattaataacggagttgtcgaagaagacaagaagtttttcgagttttatgacgc 1031

                                                                        
Query: 389  cttaaaaccttcgcatctaattcaatccggtgtaatacatgccaagaataaaagatctct 448
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1032 cttaaaaccttcgcatctaattcaatccggtgtaatacatgccaagaataaaagatctct 1091

                                                                        
Query: 449  aactggaaggaaatggaaatcctataaatgtgaacttacaaataggtctttaaaacttta 508
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1092 aactggaaggaaatggaaatcctataaatgtgaacttacaaataggtctttaaaacttta 1151

                                                                        
Query: 509  ttcgatcaagactggtgactgtaggtattctgttccaatggagaatgtagttgactgtat 568
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1152 ttcgatcaagactggtgactgtaggtattctgttccaatggagaatgtagttgactgtat 1211

                                                                        
Query: 569  tgaagtggacagtaaagatcctttattcgcagtaatcactttcaaccaaaggctaaaact 628
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1212 tgaagtggacagtaaagatcctttattcgcagtaatcactttcaaccaaaggctaaaact 1271

                                                                        
Query: 629  aaaagctaatgatgaagatgaattagtagattggatcataaatacaaagagttgcgtaat 688
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1272 aaaagctaatgatgaagatgaattagtagattggatcataaatacaaagagttgcgtaat 1331

                                                                        
Query: 689  ggttagaaactcattagcagcacacacaaaaagaagttgagatagataggcgatggtcct 748
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1332 ggttagaaactcattagcagcacacacaaaaagaagttgagatagataggcgatggtcct 1391

                   
Query: 749  cacattt 755
            |||||||
Sbjct: 1392 cacattt 1398


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7148
Number of Sequences: 1807
Number of extensions: 7148
Number of successful extensions: 48
Number of sequences better than 1.0e-20: 1
length of query: 953
length of database: 10,358,551
effective HSP length: 16
effective length of query: 937
effective length of database: 10,329,639
effective search space: 9678871743
effective search space used: 9678871743
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)