BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC14ZD09RM1.SCF screened BAC_end
         (956 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1551                                                        1685   0.0  

>3x_Contig1551 
          Length = 9073

 Score = 1685 bits (850), Expect = 0.0
 Identities = 890/901 (98%), Gaps = 2/901 (0%)
 Strand = Plus / Minus

                                                                        
Query: 44   gcttcgagagggatagcgaacatatttttggtggaaaagtctgacagaatttcaggtaaa 103
            ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 3075 gcttcgagagggatagcgaacatatctttggtggaaaagtctgacagaatttcaggtaaa 3016

                                                                        
Query: 104  aaaaaatgaagacaaggtaaaaataaagaatggtatgccagattaacaaacacactaaaa 163
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3015 aaaaaatgaagacaaggtaaaaataaagaatggtatgccagattaacaaacacactaaaa 2956

                                                                        
Query: 164  tacagtgagagaagcaacttatagacataagttatattaggtaattcaccatgctttatt 223
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||  || |
Sbjct: 2955 tacagtgagagaagcaacttatagacataagttatattaggtaattcaccatgcactaat 2896

                                                                        
Query: 224  atctttcgaattcaaagttcaatactgaaattccatgtcactgtccgcatgagaactggg 283
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2895 atctttcgaattcaaagttcaatactgaaattccatgtcactgtccgcatgagaactggg 2836

                                                                        
Query: 284  caacagcgtgattacgcaacgtaagttaatttgtatctcaaggtatggcagagccttctt 343
            |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 2835 caacagcgtgattacgcaacgtaagtcaatttgtatctcaaggtatggcagagccttctt 2776

                                                                        
Query: 344  atacttctcttaatacaactgtaaaacatacatcattttatcagattaactagagaagag 403
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2775 atacttctcttaatacaactgtaaaacatacatcattttatcagattaactagagaagag 2716

                                                                        
Query: 404  ccatgaaacagtcataataatatacataatataaagtaacagaaacgaagaaaaagtcat 463
            ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2715 ccatgcaacagtcataataatatacataatataaagtaacagaaacgaagaaaaagtcat 2656

                                                                        
Query: 464  aaaactgataaaaccgttaagttagttctatcatttagttttgaactacgcaaagaacgt 523
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2655 aaaactgataaaaccgttaagttagttctatcatttagttttgaactacgcaaagaacgt 2596

                                                                        
Query: 524  tgaaaattcatcatcaaacatgtcaagcgcagaatcaagaaatagatcgttatccctaat 583
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2595 tgaaaattcatcatcaaacatgtcaagcgcagaatcaagaaatagatcgttatccctaat 2536

                                                                        
Query: 584  gccataaggaagtgcattcatatcgagaatatgtgattcttgattggtgggtggcaatga 643
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2535 gccataaggaagtgcattcatatcgagaatatgtgattcttgattggtgggtggcaatga 2476

                                                                        
Query: 644  ccagtcaaatgcctggataatgctagtggaaaactcgtccgatacaataaacaagtatga 703
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2475 ccagtcaaatgcctggataatgctagtggaaaactcgtccgatacaataaacaagtatga 2416

                                                                        
Query: 704  ttgattgagtaagttgtctaattccaacccacgttcatttttgaaggtgtcatgaaccaa 763
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2415 ttgattgagtaagttgtctaattccaacccacgttcatttttgaaggtgtcatgaaccaa 2356

                                                                        
Query: 764  tttgaaatacctggtagctaaaacggcattaaatgacacgtcggtgtcagtttgcaaata 823
            |||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2355 tttgaaatacctgtaagctaaaacggcattaaatgacacgtcggtgtcagtttgcaaata 2296

                                                                        
Query: 824  cgtatcanacgtagcaatgaatttctgaagatctacatcactggacacaacggccgaccc 883
            ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2295 cgtatcaaacgtagcaatgaatttctgaagatctacatcactggacacaacggccgaccc 2236

                                                                        
Query: 884  atcgtctt-acgattcatgtatgcatcagaaaatat-agaacgagctcatgtgtgactct 941
            |||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 2235 atcgtcttcacgattcatgtatgcatcagaaaatataagaacgagctcatgtgtgactct 2176

             
Query: 942  c 942
            |
Sbjct: 2175 c 2175


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7683
Number of Sequences: 1807
Number of extensions: 7683
Number of successful extensions: 53
Number of sequences better than 1.0e-20: 1
length of query: 956
length of database: 10,358,551
effective HSP length: 16
effective length of query: 940
effective length of database: 10,329,639
effective search space: 9709860660
effective search space used: 9709860660
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)