BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC14ZD10FM1.SCF screened BAC_end
(913 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1189 1402 0.0
>3x_Contig1189
Length = 5010
Score = 1402 bits (707), Expect = 0.0
Identities = 744/754 (98%), Gaps = 3/754 (0%)
Strand = Plus / Plus
Query: 88 cgggcacttttcttgttgttcatccaaagtagttttaatattccagatacatagtcagtt 147
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4168 cgggcacttttcttgttgttcatccaaagtagttttaatattccagatacatagtcagtt 4227
Query: 148 attataacattagataggttacattgaaagataaaaaaggatgggaatgctgtagttgat 207
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4228 attataacattagataggttacattgaaagataaaaaaggatgggaatgctgtagttgat 4287
Query: 208 cccacttactgctgcaaagtacactcccaattacaaactaccaccaatttgctctctgtg 267
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4288 cccacttactgctgcaaagtacactcccaattacaaactaccaccaatttgctctctgtg 4347
Query: 268 agcttcaatgatatcgttatcttccatgtccaaatcttcaggggtctgatctggtaacac 327
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4348 agcttcaatgatatcgttatcttccatgtccaaatcttcaggggtctgatctggtaacac 4407
Query: 328 acgcacaccgtcgtaaaggaatcttagggattcaatctctttaccttgtctcttagcaaa 387
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4408 acgcacaccgtcgtaaaggaatcttagggattcaatctctttaccttgtctcttagcaaa 4467
Query: 388 tgcctccattaatctttttaatggagtggtctttttgatcttgaagaagatctcactgga 447
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4468 tgcctccattaatctttttaatggagtggtctttttgatcttgaagaagatctcactgga 4527
Query: 448 tccatccgaaaccttcaagttaatatgtgtttctggcttaacatccaccttttgttcttg 507
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4528 tccatccgaaaccttcaagttaatatgtgtttctggcttaacatccaccttttgttcttg 4587
Query: 508 ttcttctgacatttcaaactgtggttatatatataggcgttgaagaatggagaaacagga 567
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4588 ttcttctgacatttcaaactgtggttatatatataggcgttgaagaatggagaaacagga 4647
Query: 568 ttcaatgaatgtttaaagactcgctttttcttcttctaactctcggcagtatagattgag 627
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4648 ttcaatgaatgtttaaagactcgctttttcttcttctaactctcggcagtatagattgag 4707
Query: 628 cttttgtttgttaaggtaatttgtattgttgaactaattcctggccaaaaaaaaaaaata 687
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4708 cttttgtttgttaaggtaatttgtattgttgaactaattcctggccaaaaaaaaaaaata 4767
Query: 688 ctgtagtcctgaaatttgactgtcaactgacatggaaaagagctctaacaaaaagcagtt 747
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4768 ctgtagtcctgaaattcgactgtcaactgacatggaaaagagctctaacaaaaagcagtt 4827
Query: 748 tccttctttc-ttttgagagcattgaaatgagaagtttgggggaggggaagggttacgac 806
|||||||| | |||||||||||| |||||||||||| |||| ||||||||| |||||
Sbjct: 4828 tccttcttcctttttgagagcatgaaaatgagaagttcgggg--agggaagggtaacgac 4885
Query: 807 ccacaggcacgtgatctttcactcctgcccattt 840
||||||||||||||||||||||||||||||||||
Sbjct: 4886 ccacaggcacgtgatctttcactcctgcccattt 4919
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 14,913
Number of Sequences: 1807
Number of extensions: 14913
Number of successful extensions: 109
Number of sequences better than 1.0e-20: 1
length of query: 913
length of database: 10,358,551
effective HSP length: 16
effective length of query: 897
effective length of database: 10,329,639
effective search space: 9265686183
effective search space used: 9265686183
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)