BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC14ZD10RM1.SCF screened BAC_end
(887 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1560 1068 0.0
3x_Contig1800 498 e-140
>3x_Contig1560
Length = 9209
Score = 1068 bits (539), Expect = 0.0
Identities = 551/554 (99%), Gaps = 1/554 (0%)
Strand = Plus / Minus
Query: 334 aaatataataaatatataatcaaggcagtatctctccgaacatcacaaacacaaaccctt 393
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3037 aaatataataaatatataatcaaggcagtatctctccgaacatcacaaacacaaaccctt 2978
Query: 394 ctaggtcaaagttattgatgattgatggatcttgagattggactgcacagagggaatcga 453
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2977 ctaggtcaaagttattgatgattgatggatcttgagattggactgcacagagggaatcga 2918
Query: 454 ctatctttaaccacactggagagtgaagttcacggattgttatgatccacaatggtacta 513
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2917 ctatctttaaccacactggagagtgaagttcacggattgttatgatccacaatggtacta 2858
Query: 514 gcacattgaggtactcttttacaaatttctctagttcttcatttttattttgatatgatt 573
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2857 gcacattgaggtactcttttacaaatttctctagttcttcatttttattttgatatgatt 2798
Query: 574 tacactcaagtattccccatccttttaatatactatgttttacttcttgttgtcatcaac 633
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2797 tacactcaagtattccccatccttttaatatactatgttttacttcttgttgtcatcaac 2738
Query: 634 caaaaatgtcttttctttttttggattaactttattttcgaaactgactttttactttaa 693
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2737 caaaaatgtcttttctttttttggattaactttattttcgaaactgactttttactttaa 2678
Query: 694 gaaaattgtcagttttccgcactgaacttgcttgggcgcatacaaaaccaaatgaaaatg 753
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2677 gaaaattgtcagttttccgcactgaacttgcttgggcgcatacaaaaccaaatgaaaatg 2618
Query: 754 aactcttctgtangcgaagaaaacgctttaatatatatacaaacacaccgaattgaattc 813
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2617 aactcttctgtaggcgaagaaaacgctttaatatatatacaaacacaccgaattgaattc 2558
Query: 814 gtttgtttcttttcttgtagatacaacgagnatgtttggggaaataactaagtaccttta 873
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
Sbjct: 2557 gtttgtttcttttcttgtagatacaacgag-atgtttggggaaataactaagtaccttaa 2499
Query: 874 tgaagagaaaaata 887
||||||||||||||
Sbjct: 2498 tgaagagaaaaata 2485
Score = 450 bits (227), Expect = e-126
Identities = 244/247 (98%), Gaps = 2/247 (0%)
Strand = Plus / Minus
Query: 53 tcagtttttattatgattggcattatttttgtttttcgaaaattgacaacaggtaaagac 112
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3318 tcagtttttattatgattggcattatttttgtttttcgaaaattgacaacaggtaaagac 3259
Query: 113 gcgaaccatattttcagaa-gccaaatcgcgaacagaattcaagaatacacgttaatgga 171
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 3258 gcgaaccatattttcagaacgccaaatcgcgaacagaattcaagaatacacgttaatgga 3199
Query: 172 acaaagcaagtaccacaaaattgaaacctcaaaaaaaagtccattgttacacgaaagaca 231
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 3198 acaaagcaagtaccacaaaattgaaacctcaaaaaaaagtccattgtaacacgaaagaca 3139
Query: 232 gacatatcaagaactcgtacggtatgagcatttgctgtaatcaagtccttttatttttga 291
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 3138 gacatatcaagaactcgtacggtatgagcatttgctgtaatcaag-ccttttatttttga 3080
Query: 292 tcaaaaa 298
|||||||
Sbjct: 3079 tcaaaaa 3073
>3x_Contig1800
Length = 38778
Score = 498 bits (251), Expect = e-140
Identities = 251/251 (100%)
Strand = Plus / Minus
Query: 295 aaaataaatattttaaatataaataaaatataataaataaaatataataaatatataatc 354
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 37968 aaaataaatattttaaatataaataaaatataataaataaaatataataaatatataatc 37909
Query: 355 aaggcagtatctctccgaacatcacaaacacaaacccttctaggtcaaagttattgatga 414
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 37908 aaggcagtatctctccgaacatcacaaacacaaacccttctaggtcaaagttattgatga 37849
Query: 415 ttgatggatcttgagattggactgcacagagggaatcgactatctttaaccacactggag 474
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 37848 ttgatggatcttgagattggactgcacagagggaatcgactatctttaaccacactggag 37789
Query: 475 agtgaagttcacggattgttatgatccacaatggtactagcacattgaggtactctttta 534
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 37788 agtgaagttcacggattgttatgatccacaatggtactagcacattgaggtactctttta 37729
Query: 535 caaatttctct 545
|||||||||||
Sbjct: 37728 caaatttctct 37718
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 10,177
Number of Sequences: 1807
Number of extensions: 10177
Number of successful extensions: 104
Number of sequences better than 1.0e-20: 2
length of query: 887
length of database: 10,358,551
effective HSP length: 16
effective length of query: 871
effective length of database: 10,329,639
effective search space: 8997115569
effective search space used: 8997115569
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)