BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC14ZE02RM1.SCF screened BAC_end
(912 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1010 1645 0.0
>3x_Contig1010
Length = 3652
Score = 1645 bits (830), Expect = 0.0
Identities = 858/865 (99%), Gaps = 2/865 (0%)
Strand = Plus / Plus
Query: 49 ttagtaattttcttctagcacccaaagcactaacacccatattttccaatgcttcatcat 108
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2258 ttagtaattttcttctagcacccaaagcactaacacccatattttccaatgcttcatcat 2317
Query: 109 ccagataaattaattcaaaccatggtttgctacctagcgcctcagagtacttatgtaatc 168
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2318 ccagataaattaattcaaaccatggtttgctacctagcgcctcagagtacttatgtaatc 2377
Query: 169 tcaacgattttaaccatgcagggacgtttttcaataattttggatcacattatcctttcg 228
|||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||
Sbjct: 2378 tcaacgattttaaccatgcagggacgtttttcaataattttggatcacataaccctttcg 2437
Query: 229 cattcatgctgttgtttgtacaattgaaattactagtagtagaagaagccgagttaaccg 288
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2438 cattcatgctgttgtttgtacaattgaaattactagtagtagaagaagccgagttaaccg 2497
Query: 289 tagtgagagcattaccagaattgctcgaggatgtggctaacgaagttttgttgaaaacat 348
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2498 tagtgagagcattaccagaattgctcgaggatgtggctaacgaagttttgttgaaaacat 2557
Query: 349 tggctttgatatttgttggagattgcggtctattcaggtattggttttgatgctgatttt 408
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2558 tggctttgatatttgttggagattgcggtctattcaggtattggttttgatgctgatttt 2617
Query: 409 gattcatattttttctgccagtggcgctgctagagctgttactattactcatgttagtac 468
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2618 gattcatattttttctgccagtggcgctgctagagctgttactattactcatgttagtac 2677
Query: 469 tgctaacggtgtttgttccaaaaggattagaactattgaggttgctaattgcattgccgt 528
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2678 tgctaacggtgtttgttccaaaaggattagaactattgaggttgctaattgcattgccgt 2737
Query: 529 tattgctgttattgtttgcattgccggatgacaagccaccctttttgaaagcattgtatg 588
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2738 tattgctgttattgtttgcattgccggatgacaagccaccctttttgaaagcattgtatg 2797
Query: 589 gatcagcagacctaggacgtgggatatcagccaaataatcgtacattggttgctgcattg 648
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2798 gatcagcagacctaggacgtgggatatcagccaaataatcgtacattggttgctgcattg 2857
Query: 649 gactggctgtattttgtggcaatggtgaccattgtctgtagatgttatcaccattaagaa 708
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2858 gactggctgtattttgtggcaatggtgaccattgtctgtagatgttatcaccattaagaa 2917
Query: 709 cgctgtctaaattcaatggctgagggttttctgcttgatgcacctgagattgaactttat 768
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2918 cgctgtctaaattcaatggctgagggttttctgcttgatgcacctgagattgaactttat 2977
Query: 769 ttggtataggggaagcaataggacccaattgaggagatatataaccactgtgaaccaaag 828
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2978 ttggtataggggaagcaataggacccaattgaggagatatataaccactgtgaaccaaag 3037
Query: 829 agtctagtttttaacttcgtactatgcaaaacttcctcgttcaatgaagatanaaga-tg 887
||||||| |||||||||||||||||||||||||||||||||||||||||||| |||| ||
Sbjct: 3038 agtctag-ttttaacttcgtactatgcaaaacttcctcgttcaatgaagataaaagattg 3096
Query: 888 gccattacagtgttctgctgagaag 912
|||| |||||||||||||||||||
Sbjct: 3097 tccataacagtgttctgctgagaag 3121
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6731
Number of Sequences: 1807
Number of extensions: 6731
Number of successful extensions: 47
Number of sequences better than 1.0e-20: 1
length of query: 912
length of database: 10,358,551
effective HSP length: 16
effective length of query: 896
effective length of database: 10,329,639
effective search space: 9255356544
effective search space used: 9255356544
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)