BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC14ZE06FM1.SCF screened BAC_end
(953 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1511 1602 0.0
>3x_Contig1511
Length = 8569
Score = 1602 bits (808), Expect = 0.0
Identities = 855/867 (98%), Gaps = 3/867 (0%)
Strand = Plus / Minus
Query: 86 caaatcaacattcgcattctgtttcctaatttcgattttcgcttggatttcttgcggagt 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7385 caaatcaacattcgcattctgtttcctaatttcgattttcgcttggatttcttgcggagt 7326
Query: 146 aatcaaggaatacaaactacatacctcgatggaacgcaaatagtgatgtggaccaccgtt 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7325 aatcaaggaatacaaactacatacctcgatggaacgcaaatagtgatgtggaccaccgtt 7266
Query: 206 gcaatttttcaccttcaacattgttggagaactaacatatagatacagagatattcataa 265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7265 gcaatttttcaccttcaacattgttggagaactaacatatagatacagagatattcataa 7206
Query: 266 cctactctaacaaaaatgctccgaaacgcacgaaaactattcttcctaactttttttttc 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7205 cctactctaacaaaaatgctccgaaacgcacgaaaactattcttcctaactttttttttc 7146
Query: 326 ctatctgtataattgaaagtaccctgatcaacgttaagccagccaaactatcgcccgtaa 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7145 ctatctgtataattgaaagtaccctgatcaacgttaagccagccaaactatcgcccgtaa 7086
Query: 386 atcttatgttagtttattcatgcatagcactagacataacaatttgacggtccatgtcaa 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7085 atcttatgttagtttattcatgcatagcactagacataacaatttgacggtccatgtcaa 7026
Query: 446 aaaacgaatcaactccaaaaggaacaggttttagtgtatacagtgcaggtgcagtagtgc 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7025 aaaacgaatcaactccaaaaggaacaggttttagtgtatacagtgcaggtgcagtagtgc 6966
Query: 506 agtagtgcatctaagctcaacaaaaactttaaaatttcctaagctgatgttttttcttgt 565
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6965 agtagtgcatctaagctcaacaaaaactttaaaatttcctaagctgatgttttttcttgt 6906
Query: 566 tttgtactgacttgttagtaagaaaaaaaataactaccggaaggttttgctttgccagct 625
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6905 tttgtactgacttgttagtaagaaaaaaaataactaccggaaggttttgctttgccagct 6846
Query: 626 tctttgcaactcaagtgcagatcgggggggggggcgtaaatcctacacccctcctgatat 685
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6845 tctttgcaactcaagtgcagatcgggggggggggcgtaaatcctacacccctcctgatat 6786
Query: 686 ctcatacgcccacggtccacttcagcagttctacgttggatcaaaaatcagagagagctg 745
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6785 ctcatacgcccacggtccacttcagcagttctacgttggatcaaaaatcagagagagctg 6726
Query: 746 caaatcaaatctcgtcatgcactttcaagggagactagacttgacctgaccagtgtattg 805
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6725 caaatcaaatctcgtcatgcactttcaagggagactagacttgacctgaccagtgtattg 6666
Query: 806 acccanagcgttttagaagaaggcattactctgaaaggtattttacaaaaacaactctcg 865
||||| |||| ||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 6665 acccaaagcggtttagaagaaggcattactctgaaaggta-tttacaaaaacaactctcg 6607
Query: 866 ccatgtataaagccggtaaagaccttttacggcgcgaataaggaaattttcaaatgcagc 925
|||||||||||| ||| |||||||| | |||||||||||| ||||||| ||||||||||
Sbjct: 6606 ccatgtataaag-cgggaaagacctctaacggcgcgaatagggaaattcccaaatgcagc 6548
Query: 926 tttttgaaacaatggcctgatttattt 952
|||||||||||||||||||| |||||
Sbjct: 6547 -ttttgaaacaatggcctgatatattt 6522
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8041
Number of Sequences: 1807
Number of extensions: 8041
Number of successful extensions: 57
Number of sequences better than 1.0e-20: 1
length of query: 953
length of database: 10,358,551
effective HSP length: 16
effective length of query: 937
effective length of database: 10,329,639
effective search space: 9678871743
effective search space used: 9678871743
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)