BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC14ZE06RM1.SCF screened BAC_end
         (944 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1654                                                        1592   0.0  

>3x_Contig1654 
          Length = 17174

 Score = 1592 bits (803), Expect = 0.0
 Identities = 878/898 (97%), Gaps = 4/898 (0%)
 Strand = Plus / Minus

                                                                        
Query: 49   tgattttgatatcaataaacgtcgattcgaagcctgctgcctttattaaattatcacgtt 108
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7237 tgattttgatatcaataaacgtcgattcgaagcctgctgcctttattaaattatcacgtt 7178

                                                                        
Query: 109  cttcagctgtcaaatccatattatccaagagaaattttaggatattgctgacatcgttag 168
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7177 cttcagctgtcaaatccatattatccaagagaaattttaggatattgctgacatcgttag 7118

                                                                        
Query: 169  aaatgttttcattatgttgtaggtaatcattgacctcctccaacattgtttcttactcat 228
            |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 7117 aaatgttttcattatgttgtaggtaatcattgacctcctccaacattgtttcgtactcat 7058

                                                                        
Query: 229  ccttatttcgtactaattcttctttcaatctgattaactctttattcttgtcctccaatg 288
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7057 ccttatttcgtactaattcttctttcaatctgattaactctttattcttgtcctccaatg 6998

                                                                        
Query: 289  tgattactagttttacattctgctctcgaagtaaaggagaatcttcgacctcttcgatgt 348
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6997 tgattactagttttacattctgctctcgaagtaaaggagaatcttcgacctcttcgatgt 6938

                                                                        
Query: 349  tggtatttgcatgactctcaaaatcgtttgtaatgttttctgtattttgggtagcctgca 408
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6937 tggtatttgcatgactctcaaaatcgtttgtaatgttttctgtattttgggtagcctgca 6878

                                                                        
Query: 409  atttttgatcgttattgaaattaacttgctttaagatctcggtcaaggccttaactttca 468
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6877 atttttgatcgttattgaaattaacttgctttaagatctcggtcaaggccttaactttca 6818

                                                                        
Query: 469  ctctgtactgtaccaattgtctctttaaaacatcagtttcactagtcatcaaatgcgaat 528
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6817 ctctgtactgtaccaattgtctctttaaaacatcagtttcactagtcatcaaatgcgaat 6758

                                                                        
Query: 529  ctgctatattaggtggataaaagtcatttatggtcccacgctgcaaccgttgtgtagata 588
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6757 ctgctatattaggtggataaaagtcatttatggtcccacgctgcaaccgttgtgtagata 6698

                                                                        
Query: 589  cctttcttgaatcattcggaaaccgatatttttcatgtgtatcattatttcttccaatta 648
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6697 cctttcttgaatcattcggaaaccgatatttttcatgtgtatcattatttcttccaatta 6638

                                                                        
Query: 649  cagcaggaaccctaccatcttccttaatccaccgattatcgctgcttatcaattggaaaa 708
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6637 cagcaggaaccctaccatcttccttaatccaccgattatcgctgcttatcaattggaaaa 6578

                                                                        
Query: 709  tatctccactactgatcaccgtatcagtctcttgagtagtattatcagtcgtagtttctt 768
            ||||||||||||||||||||||||||||||||   |||||||||||||||||||||||||
Sbjct: 6577 tatctccactactgatcaccgtatcagtctctgaggtagtattatcagtcgtagtttctt 6518

                                                                        
Query: 769  cttcgtcctcctcgctcaccgcagatttgatccgcctccgcacatttacataatatttat 828
            ||||||||||||||||||||||||| |||||||||||| |||||||   |||||||||||
Sbjct: 6517 cttcgtcctcctcgctcaccgcagaattgatccgcctcggcacattacaataatatttat 6458

                                                                        
Query: 829  tcacataatcatctttgctagtatcaatagccaatttggtttgcactaccatcatactct 888
            |||||||||||||||||||||||||||||| ||||||||||   ||||||||||||||||
Sbjct: 6457 tcacataatcatctttgctagtatcaatag-caatttggttgcaactaccatcatactct 6399

                                                                      
Query: 889  tggtgnctctc-tttttgccggactct-acttcaatttcagattgtc-tccgtatcta 943
            || || ||||| ||||||||||||||| |||  |||||||||||||| ||||||||||
Sbjct: 6398 tgttgtctctcttttttgccggactctaactcaaatttcagattgtcatccgtatcta 6341


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7340
Number of Sequences: 1807
Number of extensions: 7340
Number of successful extensions: 54
Number of sequences better than 1.0e-20: 1
length of query: 944
length of database: 10,358,551
effective HSP length: 16
effective length of query: 928
effective length of database: 10,329,639
effective search space: 9585904992
effective search space used: 9585904992
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)