BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC14ZE07FM1.SCF screened BAC_end
(918 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1244 1602 0.0
>3x_Contig1244
Length = 4689
Score = 1602 bits (808), Expect = 0.0
Identities = 828/833 (99%), Gaps = 2/833 (0%)
Strand = Plus / Minus
Query: 87 caagactagtagcaaaactggtggtaaagctcgtaaagcccgtcataagaaaggtgccat 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2194 caagactagtagcaaaactggtggtaaagctcgtaaagcccgtcataagaaaggtgccat 2135
Query: 147 gtctgacgtctctggattctcaatgagttcaagtgcacttgcacgtacagaagtgatgac 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2134 gtctgacgtctctggattctcaatgagttcaagtgcacttgcacgtacagaagtgatgac 2075
Query: 207 tgtgttagatgataaatacgatcaaatcatcggaggatatgaaaactatgaagaagagtt 266
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2074 tgtgttagatgataaatacgatcaaatcatcggaggatatgaaaactatgaagaagagtt 2015
Query: 267 agctgaagatgaagagaaacatgaaagctttgatatgctcaaagaacgtccagatctcga 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2014 agctgaagatgaagagaaacatgaaagctttgatatgctcaaagaacgtccagatctcga 1955
Query: 327 atctatgctcgacgatttcctggataattatgaacttggaagtggtaatagaaagctagt 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1954 atctatgctcgacgatttcctggataattatgaacttggaagtggtaatagaaagctagt 1895
Query: 387 taagaaggatgaagagatcgccagactaaaagaagctgctgacgaagtcagcaaaggtaa 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1894 taagaaggatgaagagatcgccagactaaaagaagctgctgacgaagtcagcaaaggtaa 1835
Query: 447 gctatcgatgagaagaaaaagggaaaaggagaagaaatccgtgaaagggattacaaatgg 506
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1834 gctatcgatgagaagaaaaagggaaaaggagaagaaatccgtgaaagggattacaaatgg 1775
Query: 507 acttaacagtctcaagttttaaacagttcctcttttcatctgcttctcaatttgctttct 566
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1774 acttaacagtctcaagttttaaacagttcctcttttcatctgcttctcaatttgctttct 1715
Query: 567 tatgatacttttatacatagatcggtcaaattcaccatttatttcgcacttaattataaa 626
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1714 tatgatacttttatacatagatcggtcaaattcaccatttatttcgcacttaattataaa 1655
Query: 627 gatctatagattcaattccaacataatataatcggaaccttcttgaacactccagtagtt 686
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1654 gatctatagattcaattccaacataatataatcggaaccttcttgaacactccagtagtt 1595
Query: 687 gtttagtctagtgacatctaacctgccttntctttgtctcgatgtgttgcaatatcgata 746
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 1594 gtttagtctagtgacatctaacctgccttttctttgtctcgatgtgttgcaatatcgata 1535
Query: 747 ttaaaatttagtactatttatgaaactatcaacanttcanaatgatggccatacccttca 806
|||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||
Sbjct: 1534 ttaaaatttagtactatttatgaaactatcaacaattcaaaatgatggccatacccttca 1475
Query: 807 aaaagagaatattaacaaggaaagaggaaagctactgtgatagaggtatttctaatctcg 866
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1474 aaaagagaatattaacaaggaaagaggaaagctactgtgatagaggtatttctaatctcg 1415
Query: 867 aattgcacactattgatt-accaccatgagtgacg-aatttccaagttaagaa 917
|||||||||||||||||| |||||||||||||||| |||||||||||||||||
Sbjct: 1414 aattgcacactattgattaaccaccatgagtgacgaaatttccaagttaagaa 1362
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7018
Number of Sequences: 1807
Number of extensions: 7018
Number of successful extensions: 52
Number of sequences better than 1.0e-20: 1
length of query: 918
length of database: 10,358,551
effective HSP length: 16
effective length of query: 902
effective length of database: 10,329,639
effective search space: 9317334378
effective search space used: 9317334378
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)