BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC14ZE07RM1.SCF screened BAC_end
(909 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig653 1229 0.0
3x_Contig1744 258 2e-68
>3x_Contig653
Length = 2427
Score = 1229 bits (620), Expect = 0.0
Identities = 646/652 (99%), Gaps = 2/652 (0%)
Strand = Plus / Minus
Query: 256 ggcctctttaccacgctggtataacttatctatctgttctttcgttagcggatcctgttc 315
||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1963 ggcctctttcccccgctggtataacttatctatctgttctttcgttagcggatcctgttc 1904
Query: 316 tcttgttaattcagggtccaaaggaacttcgtaccacaacaaatctgatggaacaagtaa 375
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1903 tcttgttaattcagggtccaaaggaacttcgtaccacaacaaatctgatggaacaagtaa 1844
Query: 376 tttatcactttgaacaatatgagtttgagtgatcatgtcggattgatcttcctttttttt 435
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1843 tttatcactttgaacaatatgagtttgagtgatcatgtcggattgatcttcctttttttt 1784
Query: 436 ttctgctggtttaggactaagtggttcctcctctttctctaccgtctcttcttcttcttc 495
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1783 ttctgctggtttaggactaagtggttcctcctctttctctaccgtctcttcttcttcttc 1724
Query: 496 ttcttcaacttctacctcctcctcttcaatatctttctcttctttgcctgcatcctcagt 555
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1723 ttcttcaacttctacctcctcctcttcaatatctttctcttctttgcctgcatcctcagt 1664
Query: 556 aactgttggttcttctacaacttcaggttcaggtagtttatcgaatcccatattcttcaa 615
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1663 aactgttggttcttctacaacttcaggttcaggtagtttatcgaatcccatattcttcaa 1604
Query: 616 taaagcactgaaatcgctcttaaactcgtcatcaacttcttcatcggcttcattgaattc 675
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1603 taaagcactgaaatcgctcttaaactcgtcatcaacttcttcatcggcttcattgaattc 1544
Query: 676 aatctcactggcatcgtcgtcaacaccatcaacaagctggacatctttttcagaggctcc 735
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1543 aatctcactggcatcgtcgtcaacaccatcaacaagctggacatctttttcagaggctcc 1484
Query: 736 aagagacagagcttcacggatcaattcttcattggtgacagcagtttcctctttagctgg 795
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1483 aagagacagagcttcacggatcaattcttcattggtgacagcagtttcctctttagctgg 1424
Query: 796 agtaacgtctgtctctttttcgccctgcttcttactcttcttaggcttagtgtctttggc 855
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1423 agtaacgtctgtctctttttcgccctgcttcttactcttcttaggcttagtgtctttggc 1364
Query: 856 ctttgaagct-ccaatttgggagacactttctccttc-atttggataaatca 905
|||||||||| ||||||||| ||||||||||||||| ||||||||||||||
Sbjct: 1363 ctttgaagctcccaatttggaggacactttctccttcaatttggataaatca 1312
>3x_Contig1744
Length = 24119
Score = 258 bits (130), Expect = 2e-68
Identities = 130/130 (100%)
Strand = Plus / Plus
Query: 49 taatgcggaatttcttgacttcttcccgcaaaaggatatcaaagaatcaagagatttgat 108
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23990 taatgcggaatttcttgacttcttcccgcaaaaggatatcaaagaatcaagagatttgat 24049
Query: 109 attatgcaatggagattcctgtagcaataaagtcaaagcactaattttatcgttcaacgt 168
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24050 attatgcaatggagattcctgtagcaataaagtcaaagcactaattttatcgttcaacgt 24109
Query: 169 accatcgctt 178
||||||||||
Sbjct: 24110 accatcgctt 24119
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 11,259
Number of Sequences: 1807
Number of extensions: 11259
Number of successful extensions: 496
Number of sequences better than 1.0e-20: 2
length of query: 909
length of database: 10,358,551
effective HSP length: 16
effective length of query: 893
effective length of database: 10,329,639
effective search space: 9224367627
effective search space used: 9224367627
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)