BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC14ZE08FM1.SCF screened BAC_end
         (917 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig611                                                         1606   0.0  

>3x_Contig611 
          Length = 2628

 Score = 1606 bits (810), Expect = 0.0
 Identities = 825/829 (99%), Gaps = 1/829 (0%)
 Strand = Plus / Plus

                                                                        
Query: 89   tcgtatggtaaaaataaagtcataaattgtaagtgtctgtaaaacaagccaaggagttca 148
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 934  tcgtatggtaaaaataaagtcataaattgtaagtgtctgtaaaacaagccaaggagttca 993

                                                                        
Query: 149  agttctgcctcattttgtttaagcatgtccttcttatatagacaagaatattcttcccag 208
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 994  agttctgcctcattttgtttaagcatgtccttcttatatagacaagaatattcttcccag 1053

                                                                        
Query: 209  ccatttttttggtccataattccaggaatagcctgtacatttgcagtggatttctgaggt 268
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1054 ccatttttttggtccataattccaggaatagcctgtacatttgcagtggatttctgaggt 1113

                                                                        
Query: 269  gttctacccttgactgtaatttcaaatcttgatattagacaataacataaccataatcgt 328
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1114 gttctacccttgactgtaatttcaaatcttgatattagacaataacataaccataatcgt 1173

                                                                        
Query: 329  cttctataatttttatacctaggatcaattctcatgtttccagtcggttcaagaaattgt 388
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1174 cttctataatttttatacctaggatcaattctcatgtttccagtcggttcaagaaattgt 1233

                                                                        
Query: 389  gatggatccctatcaagacccagatcagaaaccaaaggtcccatcatgccaataacacct 448
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1234 gatggatccctatcaagacccagatcagaaaccaaaggtcccatcatgccaataacacct 1293

                                                                        
Query: 449  tcggatgttgaatcgtagaatatactacataggtcaggttgatgagcaaggatgttccaa 508
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1294 tcggatgttgaatcgtagaatatactacataggtcaggttgatgagcaaggatgttccaa 1353

                                                                        
Query: 509  agcagcatgtgccaagaaataacttcttcagttcttgactgatagatgttcaatatcgac 568
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1354 agcagcatgtgccaagaaataacttcttcagttcttgactgatagatgttcaatatcgac 1413

                                                                        
Query: 569  actaattcagcggcagaagatgttaattttttctccagttctgcaaacccttcgatccaa 628
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1414 actaattcagcggcagaagatgttaattttttctccagttctgcaaacccttcgatccaa 1473

                                                                        
Query: 629  gccctgtcgccatcgtatttatgttgaacatcctgttccatagccctttgatcgaaaagc 688
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1474 gccctgtcgccatcgtatttatgttgaacatcctgttccatagccctttgatcgaaaagc 1533

                                                                        
Query: 689  cgtagtttccaatgtgatatggatagttgaagtattagataaagaatagagatgttcact 748
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1534 cgtagtttccaatgtgatatggatagttgaagtattagataaagaatagagatgttcact 1593

                                                                        
Query: 749  aacttcattttgatattagtggtaccgggattcactattatccgctctggattatgtgaa 808
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1594 aacttcattttgatattagtggtaccgggattcactattatccgctctggattatgtgaa 1653

                                                                        
Query: 809  tccatgtggatcacttcgtttagattttctttanagagatcgatatcgatacatggccat 868
            |||||||||||||||||||| |||||||||| | ||||||||||||||||||||||||||
Sbjct: 1654 tccatgtggatcacttcgttaagattttcttcaaagagatcgatatcgatacatggccat 1713

                                                             
Query: 869  atcgggttaaatgtggtggtagaagttatccaaaagtagtctaatattg 917
            |||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1714 atcggg-taaatgtggtggtagaagttatccaaaagtagtctaatattg 1761


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6341
Number of Sequences: 1807
Number of extensions: 6341
Number of successful extensions: 28
Number of sequences better than 1.0e-20: 1
length of query: 917
length of database: 10,358,551
effective HSP length: 16
effective length of query: 901
effective length of database: 10,329,639
effective search space: 9307004739
effective search space used: 9307004739
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)