BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC14ZE09FM1.SCF screened BAC_end
(944 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1521 1489 0.0
>3x_Contig1521
Length = 8057
Score = 1489 bits (751), Expect = 0.0
Identities = 803/814 (98%), Gaps = 5/814 (0%)
Strand = Plus / Plus
Query: 133 tcattaatcgacctagccatctacaaacaaactacttaaccaagaacgataaagcacttg 192
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tcattaatcgacctagccatctacaaacaaactacttaaccaagaacgataaagcacttg 60
Query: 193 ggcaatcaaagatagaaccactacaccagagttaacatttgtgcgttgcaagacagtttg 252
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 ggcaatcaaagatagaaccactacaccagagttaacatttgtgcgttgcaagacagtttg 120
Query: 253 caagtacctactctttatttcttttaaatcgatcatttcataatgaaaacagttctactt 312
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 caagtacctactctttatttcttttaaatcgatcatttcataatgaaaacagttctactt 180
Query: 313 ccacttaaaattaaggatacagagagtattagttggacaaaagggttaataacctatttg 372
|||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 181 ccactttaaattaaggatacagagagtattagttggacaaaagggtttataacctatttg 240
Query: 373 aaaaggtcatacggatctagccagtggtccgtgttttatgatggcgacaagacggcagag 432
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 aaaaggtcatacggatctagccagtggtccgtgttttatgatggcgacaagacggcagag 300
Query: 433 attgattcgtgtaggaccactgctaattcagatcttgcgccagaatcattattagatcag 492
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 attgattcgtgtaggaccactgctaattcagatcttgcgccagaatcattattagatcag 360
Query: 493 aactataagtacgccgctatattggagcaaatctatctaaggttaggcgcacacagcggt 552
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 aactataagtacgccgctatattggagcaaatctatctaaggttaggcgcacacagcggt 420
Query: 553 tcattacagatggatttcacgtggtatgaagcagaatatcactctaggttgtcagaaaaa 612
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 tcattacagatggatttcacgtggtatgaagcagaatatcactctaggttgtcagaaaaa 480
Query: 613 aaattcaagcaacatactgtagtctttgagaaatcatctgtcatgtacaacatcggtgtt 672
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 aaattcaagcaacatactgtagtctttgagaaatcatctgtcatgtacaacatcggtgtt 540
Query: 673 ctattgtctcaaatcgctaagaaaaaaatgtctgataattataagagcgcgattccttat 732
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 ctattgtctcaaatcgctaagaaaaaaatgtctgataattataagagcgcgattccttat 600
Query: 733 ttgagcaaggcaatggcttgcttcgattatatgtcgaacaactttttgaattcaccttct 792
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 ttgagcaaggcaatggcttgcttcgattatatgtcgaacaactttttgaattcaccttct 660
Query: 793 atcgattgtgcagcagaaaatacatctttttttctccacattgttgcacgccgaagctca 852
|||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||
Sbjct: 661 atcgattgtgcagcagaaaatacatc-ttttctctccacattgttgcacgccgaagctca 719
Query: 853 ggaaaatgtttct-atgacgttgattaatggaccagaatgcttcg-aaagagcatcttgg 910
|| |||||||||| |||||||||||||||||||||| |||||||| |||||||||||| |
Sbjct: 720 gg-aaatgtttctcatgacgttgattaatggaccag-atgcttcgaaaagagcatctttg 777
Query: 911 atcaacanactagcacatactgccttaaatttgt 944
|||| || ||||||||||||||||||||||||||
Sbjct: 778 atcagcaaactagcacatactgccttaaatttgt 811
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6334
Number of Sequences: 1807
Number of extensions: 6334
Number of successful extensions: 51
Number of sequences better than 1.0e-20: 1
length of query: 944
length of database: 10,358,551
effective HSP length: 16
effective length of query: 928
effective length of database: 10,329,639
effective search space: 9585904992
effective search space used: 9585904992
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)