BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC14ZE09RM1.SCF screened BAC_end
(942 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1426 1645 0.0
>3x_Contig1426
Length = 8319
Score = 1645 bits (830), Expect = 0.0
Identities = 885/898 (98%), Gaps = 4/898 (0%)
Strand = Plus / Plus
Query: 46 aatacattgctgaaggggttggggnccgaaagtattatccgttccatcaaaacaaagtat 105
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 7051 aatacattgctgaaggggttgggg-ccgaaagtattatccgttccatcaaaacaaagtat 7109
Query: 106 tatatttttactggtggtactctgaccagtgcccaaagaggatgatgccattgaatttct 165
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7110 tatatttttactggtggtactctgaccagtgcccaaagaggatgatgccattgaatttct 7169
Query: 166 aagaaaagcatagaagagctatgctattttttttggcacttttttcggctttatgtctcg 225
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 7170 aagaaaagcatagaagagctatgctattttttttggcacttttttcggcttgatgtctcg 7229
Query: 226 aaatactaggtttatatacagaagctgctcgagctggtgtatcgagcgccacatattaca 285
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7230 aaatactaggtttatatacagaagctgctcgagctggtgtatcgagcgccacatattaca 7289
Query: 286 tccaatgctgtatgatcttttgtgtcagtggcatcaaaaagaaaaaaaatatctttcgtt 345
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7290 tccaatgctgtatgatcttttgtgtcagtggcatcaaaaagaaaaaaaatatctttcgtt 7349
Query: 346 acccgcatttgtgacagaaatttcactcaatctgaatgaggaagccagcatagatagaag 405
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7350 acccgcatttgtgacagaaatttcactcaatctgaatgaggaagccagcatagatagaag 7409
Query: 406 agaattcaagggtgctacaaaggtaaatgtttaatcggtatctctattagctgatttaag 465
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7410 agaattcaagggtgctacaaaggtaaatgtttaatcggtatctctattagctgatttaag 7469
Query: 466 tacccaaactttctttaacttatcaaatactgcgacatcttttaagattttccgaacacg 525
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7470 tacccaaactttctttaacttatcaaatactgcgacatcttttaagattttccgaacacg 7529
Query: 526 ttctacgtcggttgagtttgttagctgtaatccgactctaatcactagatctgctgattt 585
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7530 ttctacgtcggttgagtttgttagctgtaatccgactctaatcactagatctgctgattt 7589
Query: 586 gctcgcaaaccctggtgactgagatagatatttttcaatggacgctttgagtacctcggc 645
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7590 gctcgcaaaccctggtgactgagatagatatttttcaatggacgctttgagtacctcggc 7649
Query: 646 gctcttctcgtccttctgtgtagcatctgattgaatgtcctctcttttaattttctcccg 705
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7650 gctcttctcgtccttctgtgtagcatctgattgaatgtcctctcttttaattttctcccg 7709
Query: 706 ctctaacgtatcccggttcaattttctttgcaacttgctgtcatttgtagataatgcagt 765
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 7710 ctctaacgtatcccggttcaattttcttgcaaacttgctgtcatttgtagataatgcagt 7769
Query: 766 cctactctttcttattttacctgcccttaccg-atttaccagtccaagtcggagtgccaa 824
|||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||
Sbjct: 7770 cctactctttcttattttacctgccc-taccgaatttaccagtccaagtcggagtgccaa 7828
Query: 825 catcaaacctttttattttggttccgtgagttttttaatgcatcaggtgcagatttgacg 884
||||||||| ||||| |||| |||||||||||||||||||||||| ||||||||||||||
Sbjct: 7829 catcaaacc-ttttagtttgtttccgtgagttttttaatgcatcaagtgcagatttgacg 7887
Query: 885 ttacgagtagcttctgcccccatgatatcatctctctcggtagtatcaacgctatttg 942
|||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||
Sbjct: 7888 ttacgagtagcttctgccccaatgatatcatctctctcgttagtatcaacgctatttg 7945
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7779
Number of Sequences: 1807
Number of extensions: 7779
Number of successful extensions: 54
Number of sequences better than 1.0e-20: 1
length of query: 942
length of database: 10,358,551
effective HSP length: 16
effective length of query: 926
effective length of database: 10,329,639
effective search space: 9565245714
effective search space used: 9565245714
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)