BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC14ZE10RM1.SCF screened BAC_end
(916 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1582 1655 0.0
>3x_Contig1582
Length = 14087
Score = 1655 bits (835), Expect = 0.0
Identities = 867/874 (99%), Gaps = 3/874 (0%)
Strand = Plus / Minus
Query: 45 gcttgaaccactggtagaagttttcgatgaattaggatccctaactcaaatgtcccttct 104
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13003 gcttgaaccactggtagaagttttcgatgaattaggatccctaactcaaatgtcccttct 12944
Query: 105 aatgggtgtagtgaaatgccataatgcagtctcaagtgctttcttacagaagatcttgga 164
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12943 aatgggtgtagtgaaatgccataatgcagtctcaagtgctttcttacagaagatcttgga 12884
Query: 165 actttgtacgacagacgtccacgatttggacgttagagacatggccatgatgtactggcg 224
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12883 actttgtacgacagacgtccacgatttggacgttagagacatggccatgatgtactggcg 12824
Query: 225 gtgtctatcgatcgacaacggtgatcaaatcatcaaccaattatttgacaagcatgaaat 284
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12823 gtgtctatcgatcgacaacggtgatcaaatcatcaaccaattatttgacaagcatgaaat 12764
Query: 285 tcctaaattgcattctaccttggaccacttctccaaggaaacattacaaagtctacttca 344
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12763 tcctaaattgcattctaccttggaccacttctccaaggaaacattacaaagtctacttca 12704
Query: 345 agagctctccactctatcctctgtgtatttcaaaccaatctcgcagatgcaacgccgtcc 404
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12703 agagctctccactctatcctctgtgtatttcaaaccaatctcgcagatgcaacgccgtcc 12644
Query: 405 caacgaagttcacatcattaaggataaggatattgatgaattaaagggaatggccacgaa 464
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12643 caacgaagttcacatcattaaggataaggatattgatgaattaaagggaatggccacgaa 12584
Query: 465 cgagatcctgaaaaacatgaacgatgatgtactacttgacatgggtgatagctctgccac 524
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12583 cgagatcctgaaaaacatgaacgatgatgtactacttgacatgggtgatagctctgccac 12524
Query: 525 gagaagtacaggcgtcctggacgaactaaatgatcttttcgatatcactggtgatatggg 584
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12523 gagaagtacaggcgtcctggacgaactaaatgatcttttcgatatcactggtgatatggg 12464
Query: 585 gaaagtaaacatttcacagaaaaccaataataacaacaacaacacctcgaattcccatgc 644
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12463 gaaagtaaacatttcacagaaaaccaataataacaacaacaacacctcgaattcccatgc 12404
Query: 645 aaccgatcttctagacttaatgtaaactagtttactcttttgaacacctgtacaaactat 704
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12403 aaccgatcttctagacttaatgtaaactagtttactcttttgaacacctgtacaaactat 12344
Query: 705 aattataatgggaaacaatgaagcagataaacttcaatcatggatgtgcctttctaaaat 764
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12343 aattataatgggaaacaatgaagcagataaacttcaatcatggatgtgcctttctaaaat 12284
Query: 765 gttaatttattatggtgcagtatctactactatatancagtaaccccagtggcatgtcat 824
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 12283 gttaatttattatggtgcagtatctactactatatacaagtaaccccagtggcatgtcat 12224
Query: 825 gtcatgtcatatcatgtcaactttattccttttgtttcttgagaaagat-ctcaagtctc 883
||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||
Sbjct: 12223 gtcatgtcatatcatgtcaactttattccttttgtttcttgag-aagatcctcaagtctc 12165
Query: 884 tcaatctatcgtt-cactatcaagtcacgttgac 916
||||||| |||| ||||||||||||||||||||
Sbjct: 12164 tcaatcttacgttccactatcaagtcacgttgac 12131
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7384
Number of Sequences: 1807
Number of extensions: 7384
Number of successful extensions: 52
Number of sequences better than 1.0e-20: 1
length of query: 916
length of database: 10,358,551
effective HSP length: 16
effective length of query: 900
effective length of database: 10,329,639
effective search space: 9296675100
effective search space used: 9296675100
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)