BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC14ZE11FM1.SCF screened BAC_end
(910 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig336 1154 0.0
3x_Contig1616 416 e-116
>3x_Contig336
Length = 1357
Score = 1154 bits (582), Expect = 0.0
Identities = 591/594 (99%)
Strand = Plus / Minus
Query: 84 tactgactctgtagctcccttttaatatcaacttttgtgcttacttcttgattgaccgct 143
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 599 tactgactctgtagctcccttttaatatcaacttttgtgcttacttcttgattgaccgct 540
Query: 144 gagccaatattaccggtagggatgaatatttgattctatagatatatgaagttttctctt 203
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 539 gagccaatattaccggtagggatgaatatttgattctatagatatatgaagttttctctt 480
Query: 204 ttcctatttttcttttttctgttttctactttttttttttgtcaaattatcagttttctt 263
||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 479 ttcctatttctctactttctgttttctactttttttttttgtcaaattatcagttttctt 420
Query: 264 tattttctgtcattctgatacggagggaaaagaagcattctgatatgctgcagagattta 323
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 419 tattttctgtcattctgatacggagggaaaagaagcattctgatatgctgcagagattta 360
Query: 324 acagagggaatcccccataaaaagcacggaaattttatgaacgcttattatttagagccg 383
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 359 acagagggaatcccccataaaaagcacggaaattttatgaacgcttattatttagagccg 300
Query: 384 cgaaactacttcttacccggggatagctcttttggttagtcattttttcttaggacatga 443
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 299 cgaaactacttcttacccggggatagctcttttggttagtcattttttcttaggacatga 240
Query: 444 gcgtattaccctagaaacaaaagtagtcagatcaaccaccaggtctatttttgatccctg 503
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 239 gcgtattaccctagaaacaaaagtagtcagatcaaccaccaggtctatttttgatccctg 180
Query: 504 agctgtgatttgctgtgacgtggcacagaattaaactttaccgtgcttcagtaatattcc 563
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 179 agctgtgatttgctgtgacgtggcacagaattaaactttaccgtgcttcagtaatattcc 120
Query: 564 tattggttctttcttccggacacactcaggagtcagagggctaagctctgcaactgttgg 623
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 119 tattggttctttcttccggacacactcaggagtcagagggctaagctctgcaactgttgg 60
Query: 624 agcttactagctttgttacgataaattcctcagaagccggaaagacgagcttta 677
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 59 agcttactagctttgttacgataaattcctcagaagccggaaagacgagcttta 6
>3x_Contig1616
Length = 10468
Score = 416 bits (210), Expect = e-116
Identities = 246/253 (97%), Gaps = 4/253 (1%)
Strand = Plus / Plus
Query: 660 ccggaaagacgagctttatggtgtggtgtccgggtgttttcatagaaactaccgtaaaac 719
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ccggaaagacgagctttatggtgtggtgtccgggtgttttcatagaaactaccgtaaaac 60
Query: 720 tgtattgcttcaatcatctttttttttagcgttttctgtcgattgtgttctattggccga 779
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 tgtattgcttcaatcatctttttttttagcgttttctgtcgattgtgttctattggccga 120
Query: 780 tttctggacggtagcgatgtttcgcatagtaaattcactcagactgggaaaaagtatttc 839
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||
Sbjct: 121 tttctggacggtagcgatgtttcgcatagtaaattcactcagactggg-aaaagtaattc 179
Query: 840 g-acgaaaacagtgctaagcgatgttcgtatttaccaaaggattcgt-aggaatgactag 897
| ||||||||||||||||||||||||||||||||| |||||| |||| ||||||||||||
Sbjct: 180 gaacgaaaacagtgctaagcgatgttcgtatttacaaaagga-tcgtaaggaatgactag 238
Query: 898 ctatggnaaatag 910
|||||| ||||||
Sbjct: 239 ctatgggaaatag 251
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 12,409
Number of Sequences: 1807
Number of extensions: 12409
Number of successful extensions: 95
Number of sequences better than 1.0e-20: 2
length of query: 910
length of database: 10,358,551
effective HSP length: 16
effective length of query: 894
effective length of database: 10,329,639
effective search space: 9234697266
effective search space used: 9234697266
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)