BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC14ZE11RM1.SCF screened BAC_end
(951 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig969 620 e-177
>3x_Contig969
Length = 3546
Score = 620 bits (313), Expect = e-177
Identities = 385/401 (96%), Gaps = 6/401 (1%)
Strand = Plus / Minus
Query: 422 tctcttgtcacagatagcagaaacaccacaaacagtcaatcttgcagctcttgttccgac 481
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3510 tctcttgtcacagatagcagaaacaccacaaacagtcaatcttgcagctcttgttccgac 3451
Query: 482 caattcggctaattttctaatcaactttctctcaacaacggtagtttcgatgttcaagtt 541
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3450 caattcggctaattttctaatcaactttctctcaacaacggtagtttcgatgttcaagtt 3391
Query: 542 agtcttgaacagatcgtcagtgtcttccaagttttcgaatggatcatcttcgatcttaga 601
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3390 agtcttgaacagatcgtcagtgtcttccaagttttcgaatggatcatcttcgatcttaga 3331
Query: 602 tggataactggtgtccatgacgtaagcctctttcaacttggagatatcttggtccttaaa 661
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3330 tggataactggtgtccatgacgtaagcctctttcaacttggagatatcttggtccttaaa 3271
Query: 662 gatgaaaccactgtcgtacaagttcaatagtactatacgcatgatttcacctagatagta 721
||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||
Sbjct: 3270 gatgaaaccactgtcgtacaagtccaatagtactagacgcatgatttcacctagatagta 3211
Query: 722 accagaagttcatctttttctaaagctagttgatcctgcctttggagtatcttcatcgat 781
|||||||| ||||| ||||| |||||| ||||| |||| |||||| |||||||||||
Sbjct: 3210 accagaag-tcatc-ttttcgaaagcttgttga-cctggtcttggagattcttcatcgat 3154
Query: 782 tataacaatcgtatttggaatcttggcaacatccaaatgtt 822
|||||| ||||||||||| ||||||||||| |||||||||
Sbjct: 3153 tataac-atcgtatttgg-ttcttggcaaca-ccaaatgtt 3116
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7417
Number of Sequences: 1807
Number of extensions: 7417
Number of successful extensions: 56
Number of sequences better than 1.0e-20: 1
length of query: 951
length of database: 10,358,551
effective HSP length: 16
effective length of query: 935
effective length of database: 10,329,639
effective search space: 9658212465
effective search space used: 9658212465
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)