BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC14ZE12RM1.SCF screened BAC_end
(963 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1127 1253 0.0
>3x_Contig1127
Length = 4949
Score = 1253 bits (632), Expect = 0.0
Identities = 682/695 (98%), Gaps = 3/695 (0%)
Strand = Plus / Plus
Query: 49 gctttacccatttcaaaccgtctatttcgattaaatttattcacatagagagacaaatag 108
|||||||||||||||||||||| | |||||||||||||||| ||| | |||||||||||
Sbjct: 403 gctttacccatttcaaaccgtcgacatcgattaaatttattc-catgg-gagacaaatag 460
Query: 109 tgtcttgagaaacatttgagcgtttttgggtggtgatacataacatttctttaaatctgt 168
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 461 tgtcttgagaaacatttgagcgtttttgggtggtgatacataacatttctttaaatctgt 520
Query: 169 ggatggtaatatacactctgatcccagatggagccaaatacacagccacttcatttgagt 228
||||||||| |||||||||||||||||||||||||||||||||||||||||||| | |
Sbjct: 521 ggatggtaa-atacactctgatcccagatggagccaaatacacagccacttcatgtttga 579
Query: 229 ggctctctgcattcaacttcgataaacccaaatccttggaacaaattgcaacagtcaaat 288
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 580 ggctctctgcattcaacttcgataaacccaaatccttggaacaaattgcaacagtcaaat 639
Query: 289 ctccattttcaaatagatgtggatcaaagtgtaagattttggtcgaaaaggtatatgatt 348
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 640 ctccattttcaaatagatgtggatcaaagtgtaagattttggtcgaaaaggtatatgatt 699
Query: 349 cctgaaatatgcatgagtttccaaagggcacgatggtttcattggaggatagggtcaaat 408
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 700 cctgaaatatgcatgagtttccaaagggcacgatggtttcattggaggatagggtcaaat 759
Query: 409 tgacatatatcatacgcctgagagccttcataaagatggcatatggggtaggcaagtgag 468
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 760 tgacatatatcatacgcctgagagccttcataaagatggcatatggggtaggcaagtgag 819
Query: 469 gttttgagaattctggggtgaagtgacccttccgctctggctggggtgactccgattcgt 528
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 820 gttttgagaattctggggtgaagtgacccttccgctctggctggggtgactccgattcgt 879
Query: 529 tattcagctcaaggtttaactctggtaatggatcatcgttaatactaaaacaccataact 588
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 880 tattcagctcaaggtttaactctggtaatggatcatcgttaatactaaaacaccataact 939
Query: 589 ccctggaaaaaagagctgcaagtactttggggtttttcctccttaggaacaactctgctt 648
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 940 ccctggaaaaaagagctgcaagtactttggggtttttcctccttaggaacaactctgctt 999
Query: 649 gaattgaccattgattatctgccttgctaggtacatattggtgatagnttatttgtttga 708
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 1000 gaattgaccattgattatctgccttgctaggtacatattggtgatagtttatttgtttga 1059
Query: 709 cagtttctaacctgtataaattgttaacgatgtcc 743
||||||||||||||||||||||| |||||||||||
Sbjct: 1060 cagtttctaacctgtataaattggtaacgatgtcc 1094
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6717
Number of Sequences: 1807
Number of extensions: 6717
Number of successful extensions: 63
Number of sequences better than 1.0e-20: 1
length of query: 963
length of database: 10,358,551
effective HSP length: 16
effective length of query: 947
effective length of database: 10,329,639
effective search space: 9782168133
effective search space used: 9782168133
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)