BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC14ZF01FM1.SCF screened BAC_end
(918 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1515 1576 0.0
>3x_Contig1515
Length = 8855
Score = 1576 bits (795), Expect = 0.0
Identities = 810/815 (99%)
Strand = Plus / Plus
Query: 86 aataaatgatttatggttctatgaatgctgttcatttatataaaaagcctttgtatagat 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5758 aataaatgatttatggttctatgaatgctgttcatttatataaaaagcctttgtatagat 5817
Query: 146 gcaaacacaatgggataaacaccaccaacacaaacttattgaaaagcacagtctttggtc 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5818 gcaaacacaatgggataaacaccaccaacacaaacttattgaaaagcacagtctttggtc 5877
Query: 206 cattgtgatagttatcaatctcagtattcaacaatagtaggtaaaattcactaaggtata 265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5878 cattgtgatagttatcaatctcagtattcaacaatagtaggtaaaattcactaaggtata 5937
Query: 266 agagtggaatcatgataaatgcgttaagtctagaagctaacgattttgagcttcgtggtt 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5938 agagtggaatcatgataaatgcgttaagtctagaagctaacgattttgagcttcgtggtt 5997
Query: 326 caggtgatgggcccttgaatattctattccagtgatagtacatttgcgtgaatgaaagac 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5998 caggtgatgggcccttgaatattctattccagtgatagtacatttgcgtgaatgaaagac 6057
Query: 386 caacaatgaaagaggaataactagtatttttcaagagcggtgagtgttcaaaatcatcat 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6058 caacaatgaaagaggaataactagtatttttcaagagcggtgagtgttcaaaatcatcat 6117
Query: 446 aaaagtgcagaatggctacaagatatattagattgatattcttaagattgtgtctgttaa 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6118 aaaagtgcagaatggctacaagatatattagattgatattcttaagattgtgtctgttaa 6177
Query: 506 agatcgaccaggccaggcctcgcattttaatccaccatagaatgttaccgaccgctgagt 565
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6178 agatcgaccaggccaggcctcgcattttaatccaccatagaatgttaccgaccgctgagt 6237
Query: 566 ataccatcaaacaacatagaaacctatgaattcctcctggtagatactttcgcgagacca 625
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6238 ataccatcaaacaacatagaaacctatgaattcctcctggtagatactttcgcgagacca 6297
Query: 626 atggaagaagaaccaaccaacgaactaacaaagcgcaatataagaaggcgcttgatatat 685
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6298 atggaagaagaaccaaccaacgaactaacaaagcgcaatataagaaggcgcttgatatat 6357
Query: 686 ggaaaaactgatatagcttaacaaccagcctccttggctgttgtcttctagtagcattca 745
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6358 ggaaaaactgatatagcttaacaaccagcctccttggctgttgtcttctagtagcattca 6417
Query: 746 tcgtataatatatggaatgaattctgatgaagtaaatactagcattaaatatcagctgag 805
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6418 tcgtataatatatggaatgaattctgatgaagtaaatactagcattaaatatcagctgag 6477
Query: 806 aagataccaattgataacaagccccatatcagtattgtatgagacgcagtttatgaattt 865
| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 6478 agaataccaattgataacaagcccataatcagtattgtatgagacgcagtttatgaattt 6537
Query: 866 cccgttatgaaaataactggattgtttatttatat 900
|||||||||||||||||||||||||||||||||||
Sbjct: 6538 cccgttatgaaaataactggattgtttatttatat 6572
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6522
Number of Sequences: 1807
Number of extensions: 6522
Number of successful extensions: 32
Number of sequences better than 1.0e-20: 1
length of query: 918
length of database: 10,358,551
effective HSP length: 16
effective length of query: 902
effective length of database: 10,329,639
effective search space: 9317334378
effective search space used: 9317334378
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)