BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC14ZF01RM1.SCF screened BAC_end
(902 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1706 1641 0.0
>3x_Contig1706
Length = 16303
Score = 1641 bits (828), Expect = 0.0
Identities = 856/863 (99%), Gaps = 3/863 (0%)
Strand = Plus / Minus
Query: 43 gcttgcagcttcaggagtggcatgtgtttcgttctttgaaaagtacagcgactttgagtt 102
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10321 gcttgcagcttcaggagtggcatgtgtttcgttctttgaaaagtacagcgactttgagtt 10262
Query: 103 aaaccttggtttccacgagagaagtgtcgagattttgcacaaaggagccaagaatatttc 162
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10261 aaaccttggtttccacgagagaagtgtcgagattttgcacaaaggagccaagaatatttc 10202
Query: 163 ggatcttgaaagtaaatgtactttatgggaagaatgcatcaatagaagtg--attatcat 220
|||||||||||||||||||||||||||||||||||||||||||||||||| | | ||
Sbjct: 10201 ggatcttgaaagtaaatgtactttatgggaagaatgcatcaatagaagtgcaaaaacaat 10142
Query: 221 tggacgtcaatcacaccagaaaactatatgaagaatgtatagaaacattgcccaattcta 280
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10141 tggacgtcaatcacaccagaaaactatatgaagaatgtatagaaacattgcccaattcta 10082
Query: 281 aagcaatcaagtttctacttccatttgctatcttagaagaatcgcgtaatgaggttgctc 340
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10081 aagcaatcaagtttctacttccatttgctatcttagaagaatcgcgtaatgaggttgctc 10022
Query: 341 gttgtagagcattgttagactacgggagcaaattactgaagcccgcacagaatgaagaac 400
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10021 gttgtagagcattgttagactacgggagcaaattactgaagcccgcacagaatgaagaac 9962
Query: 401 tttgggatttctggaggaatttcgaaactatgcacggtacaaaagactcgttcaagaaca 460
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9961 tttgggatttctggaggaatttcgaaactatgcacggtacaaaagactcgttcaagaaca 9902
Query: 461 tgctaaaagcacgtaggttcctagaggacacaatgaaagtaaatacagaggaagtatcca 520
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9901 tgctaaaagcacgtaggttcctagaggacacaatgaaagtaaatacagaggaagtatcca 9842
Query: 521 gacatgcagatagcatcgaatttagggcgtcaactgcgaaaattagtggaagcggaccac 580
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9841 gacatgcagatagcatcgaatttagggcgtcaactgcgaaaattagtggaagcggaccac 9782
Query: 581 caagcgcagaagataaaggatactcaaatacggctgaaattgatttaggtctataaaatg 640
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9781 caagcgcagaagataaaggatactcaaatacggctgaaattgatttaggtctataaaatg 9722
Query: 641 gatatatattgattaaagttgataatggcatatcgatcaatctcttatgttttgttttgg 700
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9721 gatatatattgattaaagttgataatggcatatcgatcaatctcttatgttttgttttgg 9662
Query: 701 aagatgtcgtattgtctttctttgatgacgtgtaacatacaaaaacactagtatcttact 760
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9661 aagatgtcgtattgtctttctttgatgacgtgtaacatacaaaaacactagtatcttact 9602
Query: 761 gtttttcgacccaatcagttgaactcatgtgggataatctacttagggctcttgcaaatg 820
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9601 gtttttcgacccaatcagttgaactcatgtgggataatctacttagggctcttgcaaatg 9542
Query: 821 caaaccgttcttcatctaatgcgaaaatctgtgcttttttggc-atatccttagaaaatc 879
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 9541 caaaccgttcttcatctaatgcgaaaatctgtgcttttttggcaatatccttagaaaatc 9482
Query: 880 cgtgtttactgaccaattcatcc 902
|||||||||||||||||||||||
Sbjct: 9481 cgtgtttactgaccaattcatcc 9459
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6313
Number of Sequences: 1807
Number of extensions: 6313
Number of successful extensions: 32
Number of sequences better than 1.0e-20: 1
length of query: 902
length of database: 10,358,551
effective HSP length: 16
effective length of query: 886
effective length of database: 10,329,639
effective search space: 9152060154
effective search space used: 9152060154
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)