BLASTN 2.2.3 [May-13-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= FJ0AC14ZF02FM1.SCF screened BAC_end (912 letters) Database: Klactis 3X assemblage 11/02 1807 sequences; 10,358,551 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value 3x_Contig721 367 e-101 3x_Contig1586 268 2e-71 >3x_Contig721 Length = 1977 Score = 367 bits (185), Expect = e-101 Identities = 185/185 (100%) Strand = Plus / Plus Query: 86 ttagataacgataaagacttattaaaccgagtagaagagataaaagcgcaattccaagac 145 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1782 ttagataacgataaagacttattaaaccgagtagaagagataaaagcgcaattccaagac 1841 Query: 146 agggccaaaacacctttcagcgctgaagaagatgttgatgatatatatgatgcagatgag 205 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1842 agggccaaaacacctttcagcgctgaagaagatgttgatgatatatatgatgcagatgag 1901 Query: 206 catggggcacggagccggcaaatcatgtctgcgcgttccgggacagggaacaaggaagta 265 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1902 catggggcacggagccggcaaatcatgtctgcgcgttccgggacagggaacaaggaagta 1961 Query: 266 atacc 270 ||||| Sbjct: 1962 atacc 1966 >3x_Contig1586 Length = 12315 Score = 268 bits (135), Expect = 2e-71 Identities = 240/271 (88%), Gaps = 3/271 (1%) Strand = Plus / Minus Query: 644 taccgtagattcgcctttccgaaagtacgagctttggatcaacaatttatagagttgtac 703 ||||||||||||||| ||||||||||||| ||||||| ||| | |||||||||| || | Sbjct: 12253 taccgtagattcgccattccgaaagtacgcgctttggcacaaaactttatagagtagtcc 12194 Query: 704 gatgatactgggatcataaagctggccacggaaaacaactggctatctgttgaatggtga 763 ||||| | | | || ||| ||| || | ||||| ||||| | ||||||| |||||||| Sbjct: 12193 gatgaaaatagaatattaatgctagcaaaagaaaaaaactgacaatctgttaaatggtga 12134 Query: 764 attgaatctcctcattgctggacctttttttttttttttttgaacagtgggtgaatcaat 823 ||||||||||||||||| | |||||||||||||||||||||||||||||||||||||| Sbjct: 12133 attgaatctcctcattgaatggcctttttttttttttttttgaacagtgggtgaatcaat 12074 Query: 824 tgagtcttcatatctaaaagaccaaaattccttatt-acaccttagaa-tgatgtcaaca 881 |||||||||||||||||||||||||||||||||||| ||| | ||||| ||||||||||| Sbjct: 12073 tgagtcttcatatctaaaagaccaaaattccttattaacaac-tagaattgatgtcaaca 12015 Query: 882 ttctagtgtgtgaatattatgttccgagttt 912 ||||||||||||||||||||||||||||||| Sbjct: 12014 ttctagtgtgtgaatattatgttccgagttt 11984 Database: Klactis 3X assemblage 11/02 Posted date: Nov 27, 2002 12:23 PM Number of letters in database: 10,358,551 Number of sequences in database: 1807 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 17,434 Number of Sequences: 1807 Number of extensions: 17434 Number of successful extensions: 2804 Number of sequences better than 1.0e-20: 2 length of query: 912 length of database: 10,358,551 effective HSP length: 16 effective length of query: 896 effective length of database: 10,329,639 effective search space: 9255356544 effective search space used: 9255356544 T: 0 A: 40 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 50 (99.6 bits)