BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC14ZF02RM1.SCF screened BAC_end
(905 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1549 1622 0.0
>3x_Contig1549
Length = 13677
Score = 1622 bits (818), Expect = 0.0
Identities = 857/864 (99%), Gaps = 5/864 (0%)
Strand = Plus / Plus
Query: 42 gcttgacatatttgttttgccatttttatgctgtacgtacctattgatgtttttggacaa 101
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 571 gcttgacatatttgttttgccatttttatgctgtacgtacctattgatgtttttggacaa 630
Query: 102 ggcattgttaaattatgccgcatcgatggggatcaaggacaatttggttggtgatgagtt 161
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 631 ggcattgttaaattatgccgcatcgatggggatcaaggacaatttggttggtgatgagtt 690
Query: 162 ttctaatttgggtactattttctctgcatcgtatatctttgcagaaccgtttgctggtgt 221
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 691 ttctaatttgggtactattttctctgcatcgtatatctttgcagaaccgtttgc-ggtgt 749
Query: 222 atttgctccaaaggtttcccgtgtctcgagtgttgggctcgttcatcatatgttggggtg 281
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 750 atttgctccaaaggtttcccgtgtctcgagtgttgggctcgttcatcatatgttggggtg 809
Query: 282 tcgttgtcgtttgtcattgtgtttgtaagacatatgcaagtttgatgattgtacgtgttc 341
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 810 tcgttgtcgtttgtcattgtgtttgtaagacatatgcaagtttgatgattgtacgtgttc 869
Query: 342 tattagggttgttcgagtcgtgtagtgctgtaggatgcattacagtcaacggtatgtatt 401
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 870 tattagggttgttcgagtcgtgtagtgctgtaggatgcattacagtcaacggtatgtatt 929
Query: 402 atacgaaatcggaacaaacgcaaagaattggttactgggctgctcaagcaggaaccggtt 461
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 930 atacgaaatcggaacaaacgcaaagaattggttactgggctgctcaagcaggaaccggtt 989
Query: 462 atatcattggtggtttaatgtcatttgggtttttacattaccacggaactgaatttacct 521
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 990 atatcattggtggtttaatgtcatttgggtttttacattaccacggaactgaatttacct 1049
Query: 522 cgtggcaaatcatgttccttgttgtcggtttagtgaccgtgggattcggtatagtaacct 581
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1050 cgtggcaaatcatgttccttgttgtcggtttagtgaccgtgggattcggtatagtaacct 1109
Query: 582 atttctatttaccagataacgttcctaaggcatggttccttaacgagaaggagaaagtcc 641
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1110 atttctatttaccagataacgttcctaaggcatggttccttaacgagaaggagaaagtcc 1169
Query: 642 aagtcattgaacatatcagatcaaaccaaactggtcttgaaacaaagaaaatcaagatgc 701
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1170 aagtcattgaacatatcagatcaaaccaaactggtcttgaaacaaagaaaatcaagatgc 1229
Query: 702 accaagtgaaagaattgttactcaaggataaattgacatggccaatgttattattgactg 761
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1230 accaagtgaaagaattgttactcaaggataaattgacatggccaatgttattattgactg 1289
Query: 762 gttgttctcaaatttcaactggatccattggaacctttttcagtgaccatcacaggtaca 821
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 1290 gttgttctcaaatttcaactggatccattggaacc-ttttcagtgaccatcacaggtaca 1348
Query: 822 tttggtttttgatagctaccanacatncctttttgcaacttcctatcggatgcgttacca 881
||||| ||||||||||||||| |||| || ||||||||||||||||||||||||||||||
Sbjct: 1349 tttgg-ttttgatagctaccagacatccc-ttttgcaacttcctatcggatgcgttacca 1406
Query: 882 tcattgattattctaatcacaacc 905
||| ||||||||||||||||||||
Sbjct: 1407 tca-tgattattctaatcacaacc 1429
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6595
Number of Sequences: 1807
Number of extensions: 6595
Number of successful extensions: 43
Number of sequences better than 1.0e-20: 1
length of query: 905
length of database: 10,358,551
effective HSP length: 16
effective length of query: 889
effective length of database: 10,329,639
effective search space: 9183049071
effective search space used: 9183049071
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)